RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 NDRG3Q9UGV2 375 aa13.79□□□□□ -0.2
VPS9D1-201ENST00000389386 DPP7Q9UHL4 492 aa13.79□□□□□ -0.2
VPS9D1-201ENST00000389386 CEP290O15078 2479 aa13.79□□□□□ -0.2
VPS9D1-201ENST00000389386 SIGLEC5O15389 551 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 KDM4BO94953 1096 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 NFATC1O95644 943 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 F11P03951 625 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 S100A6P06703 90 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 SRPRAP08240 638 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 OR1D2P34982 312 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 MTNR1AP48039 350 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 MAZP56270 477 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 SIGLEC14Q08ET2 396 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 ARMC12Q5T9G4 340 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 SLC27A4Q6P1M0 643 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 FAM151BQ6UXP7 276 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 TRMT11Q7Z4G4 463 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 OXR1Q8N573 874 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 OR4K1Q8NGD4 311 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 OR4D10Q8NGI6 311 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 WRAP53Q9BUR4 548 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 RPS6KB2Q9UBS0 482 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 ACSL6Q9UKU0 697 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 ZFR2Q9UPR6 939 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 MAP4K5Q9Y4K4 846 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 PRODHO43272 600 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 JUPP14923 745 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 DRD5P21918 477 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 ITGB8P26012 769 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 ASMTP46597 345 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 SLC6A12P48065 614 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 SGSHP51688 502 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 ZNF385BQ569K4 471 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 TCTN3Q6NUS6 607 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 NSMAFQ92636 917 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 LCORQ96JN0 433 aaPredicted RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 MTERF1Q99551 399 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 CRISPLD2Q9H0B8 497 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 NPDC1Q9NQX5 325 aaPredicted RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 CTSFQ9UBX1 484 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 MLXQ9UH92 298 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 AFF4Q9UHB7 1163 aaKnown RBP13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 MYO7AQ13402 2215 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 PIKFYVEQ9Y2I7 2098 aa13.78□□□□□ -0.2
VPS9D1-201ENST00000389386 ANKDD1BA6NHY2 528 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 GAPDHSO14556 408 aaPredicted RBP13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 MT-ND4P03905 459 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 ANXA4P09525 319 aaPredicted RBP13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 ARAFP10398 606 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 VIPR1P32241 457 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 SLC1A3P43003 542 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 MTNR1BP49286 362 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 CHIT1Q13231 466 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 TRIM40Q6P9F5 258 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 ZER1Q7Z7L7 766 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 PDZD9Q8IXQ8 264 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 WBP2Q969T9 261 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 KCTD12Q96CX2 325 aaKnown RBP13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 ZNF275Q9NSD4 429 aaPredicted RBP13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 FBXW2Q9UKT8 454 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 SLC22A14Q9Y267 594 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 CA5BQ9Y2D0 317 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 SLC6A5Q9Y345 797 aa13.77□□□□□ -0.2
VPS9D1-201ENST00000389386 SLC38A8A6NNN8 435 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 SDC3O75056 442 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 H1F0P07305 194 aaKnown RBP13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 TACR2P21452 398 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 HNF1BP35680 557 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 CDK5Q00535 292 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 DEFA5Q01523 94 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 ATP13A5Q4VNC0 1218 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 NCEH1Q6PIU2 408 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 C16orf59Q7L2K0 433 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 CDH26Q8IXH8 852 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 WDR20Q8TBZ3 569 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 ZDHHC1Q8WTX9 485 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 FUZQ9BT04 418 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 TMEM121BQ9BXQ6 578 aaPredicted RBP13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 RSPO3Q9BXY4 272 aaPredicted RBP13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 TMPRSS13Q9BYE2 586 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 LINC00597Q9H2U6 94 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 ANGPT4Q9Y264 503 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 RASD1Q9Y272 281 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 ZFP37Q9Y6Q3 630 aaPredicted RBP13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 OR6C75A6NL08 312 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 SNAPC5O75971 98 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 C6orf47O95873 294 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 CD22P20273 847 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 DGCR2P98153 550 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 DDX39BQ13838 428 aaKnown RBP13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 SLC5A12Q1EHB4 618 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 MINDY4Q4G0A6 757 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 RNASE12Q5GAN4 147 aaKnown RBP13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 DEF8Q6ZN54 512 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 ANKRD33Q7Z3H0 272 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 FBXO22Q8NEZ5 403 aa13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 TEFMQ96QE5 360 aaKnown RBP13.77□□□□□ -0.21
VPS9D1-201ENST00000389386 NKIRAS2Q9NYR9 191 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms