RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PIGXQ8TBF5 258 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 SENP5Q96HI0 755 aaPredicted RBP11.38□□□□□ -0.59
CLIP3-201ENST00000360535 MSLNLQ96KJ4 702 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 OR7D2Q96RA2 312 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 INSM2Q96T92 566 aaPredicted RBP11.38□□□□□ -0.59
CLIP3-201ENST00000360535 MCHR1Q99705 422 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 CACNA1IQ9P0X4 2223 aa11.38□□□□□ -0.59
CLIP3-201ENST00000360535 A0A0G2JMP0 313 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 A0A0X1KG70 313 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 ABHD14A-ACY1A0A1B0GW23 586 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 LRIT2A6NDA9 550 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 CISD3P0C7P0 127 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 CPN2P22792 545 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 P2RY2P41231 377 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 SLC3A1Q07837 685 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 EFR3AQ14156 821 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 C3orf38Q5JPI3 329 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 ENTPD8Q5MY95 495 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 MZT2BQ6NZ67 158 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF614Q8N883 585 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 OR10H4Q8NGA5 316 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 OR4M2Q8NGB6 313 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 POF1BQ8WVV4 589 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 SNAPC3Q92966 411 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 RSPRY1Q96DX4 576 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 CLIP3Q96DZ5 547 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 LRIG1Q96JA1 1093 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 FAM83CQ9BQN1 747 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 BEX1Q9HBH7 125 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF624Q9P2J8 865 aaPredicted RBP11.37□□□□□ -0.59
CLIP3-201ENST00000360535 SF3B6Q9Y3B4 125 aaKnown RBP11.37□□□□□ -0.59
CLIP3-201ENST00000360535 A0A1W2PPV9 198 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 AIFM1O95831 613 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 GKN3PP0CG01 181 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 PAICSP22234 425 aaKnown RBP11.37□□□□□ -0.59
CLIP3-201ENST00000360535 IFNA8P32881 189 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 BTN3A2P78410 334 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 GPLD1P80108 840 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 CDK3Q00526 305 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 GALK2Q01415 458 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 MRPL28Q13084 256 aaKnown RBP11.37□□□□□ -0.59
CLIP3-201ENST00000360535 RDH10Q8IZV5 341 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 SLC37A3Q8NCC5 494 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 ZCCHC10Q8TBK6 192 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 GNPDA2Q8TDQ7 276 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 ADAMTS15Q8TE58 950 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 UPRTQ96BW1 309 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 ARHGAP9Q9BRR9 750 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 MRPS30Q9NP92 439 aaKnown RBP11.37□□□□□ -0.59
CLIP3-201ENST00000360535 NFKBIL1Q9UBC1 381 aaPredicted RBP11.37□□□□□ -0.59
CLIP3-201ENST00000360535 TNFRSF10DQ9UBN6 386 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 GPR34Q9UPC5 381 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 IGKV1-8A0A0C4DH67 115 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 C17orf113A0A1B0GUU1 675 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 PAHP00439 452 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 GABRA5P31644 462 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 PDX1P52945 283 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 EPHA5P54756 1037 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 SRP54P61011 504 aaKnown RBP11.37□□□□□ -0.59
CLIP3-201ENST00000360535 TRAM2Q15035 370 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 HNRNPA1L2Q32P51 320 aaKnown RBP11.37□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF628Q5EBL2 1059 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 TMEFF1Q8IYR6 380 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 KLHL36Q8N4N3 616 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 SUN3Q8TAQ9 357 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 SMG7Q92540 1137 aaKnown RBP11.37□□□□□ -0.59
CLIP3-201ENST00000360535 DPH1Q9BZG8 443 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 NDOR1Q9UHB4 597 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 ACAD8Q9UKU7 415 aa11.37□□□□□ -0.59
CLIP3-201ENST00000360535 TP53BP1Q12888 1972 aaPredicted RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 C12orf71A8MTZ7 269 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 MAN2B1O00754 1011 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 VEGFDO43915 354 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 RPN2P04844 631 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 CHRNB1P11230 501 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ACVR1BP36896 505 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 RPS5P46782 204 aaKnown RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 GCGRP47871 477 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 PPP3R1P63098 170 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 REEP5Q00765 189 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 BNC1Q01954 994 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 NDUFA9Q16795 377 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 MINDY4Q4G0A6 757 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 PPP2R2DQ66LE6 453 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SLC16A11Q8NCK7 471 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 PCNPQ8WW12 178 aaKnown RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 DEDD2Q8WXF8 326 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 PPP1R16AQ96I34 528 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ATF6BQ99941 703 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 FUZQ9BT04 418 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SLC7A7Q9UM01 511 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 EXOSC1Q9Y3B2 195 aaKnown RBP11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ZNF860A6NHJ4 632 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 MEN1O00255 615 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 GYPBP06028 91 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 CCL5P13501 91 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 ELK1P19419 428 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 GSTM3P21266 225 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 SHC1P29353 583 aa11.36□□□□□ -0.59
CLIP3-201ENST00000360535 EVI2BP34910 448 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms