RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SLCO4C1Q6ZQN7 724 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 C17orf107Q6ZR85 190 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 TMPRSS11BQ86T26 416 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CMIPQ8IY22 773 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 APCDD1Q8J025 514 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 LILRA3Q8N6C8 439 aaPredicted RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 TRMT10AQ8TBZ6 339 aaKnown RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 SP7Q8TDD2 431 aaPredicted RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 NEURL3Q96EH8 262 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 ALG14Q96F25 216 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 TIMP4Q99727 224 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 NPAS1Q99742 590 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 DPYSL5Q9BPU6 564 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 C19orf43Q9BQ61 176 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 USB1Q9BQ65 265 aaKnown RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 TMEM168Q9H0V1 697 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SERHL2Q9H4I8 314 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 MYNNQ9NPC7 610 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 RNF181Q9P0P0 153 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CFAP97Q9P2B7 532 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 RGS17Q9UGC6 210 aaPredicted RBP6.38□□□□□ -1.39
VPS39-202ENST00000348544 ATPIF1Q9UII2 106 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 FBXL2Q9UKC9 423 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 SPATA2Q9UM82 520 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 CLEC4AQ9UMR7 237 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 BAIAP2Q9UQB8 552 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 PLXND1Q9Y4D7 1925 aa6.38□□□□□ -1.39
VPS39-202ENST00000348544 A0A0B4J203 849 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ZNF98A6NK75 572 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 SLC38A8A6NNN8 435 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 HMGN4O00479 90 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 NPC1O15118 1278 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 FZD7O75084 574 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 PTP4A3O75365 173 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 URODP06132 367 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 KLK1P06870 262 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 IMPA1P29218 277 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 MAPK9P45984 424 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 OR1G1P47890 313 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 RAG2P55895 527 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ERVFC1P60507 584 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 KLF9Q13886 244 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 NDUFA9Q16795 377 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 TMEM255AQ5JRV8 349 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ADGRF1Q5T601 910 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 SLC27A4Q6P1M0 643 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 FAM198BQ6UWH4 519 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ALKAL2Q6UX46 152 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 RASSF6Q6ZTQ3 369 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ESPNLQ6ZVH7 1005 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 KLHL36Q8N4N3 616 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 SIRT6Q8N6T7 355 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 BVESQ8NE79 360 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 TRPV1Q8NER1 839 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 OR11G2Q8NGC1 345 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 OR4D9Q8NGE8 314 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 OR4Q3Q8NH05 313 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 OR52N1Q8NH53 320 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 COQ8AQ8NI60 647 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 HAVCR2Q8TDQ0 301 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ATOH1Q92858 354 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 ART5Q96L15 291 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 DPH7Q9BTV6 452 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 SPRTNQ9H040 489 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 ABCG4Q9H172 646 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 C20orf85Q9H1P6 137 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 SAV1Q9H4B6 383 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 SCPEP1Q9HB40 452 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 DMRT3Q9NQL9 472 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 PCDHB16Q9NRJ7 776 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 CA10Q9NS85 328 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 NKIRAS2Q9NYR9 191 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 PTGFRNQ9P2B2 879 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 RPS6KB2Q9UBS0 482 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 GLS2Q9UI32 602 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 CD84Q9UIB8 345 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 GPR160Q9UJ42 338 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 PRELID3BQ9Y3B1 194 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ANKDD1BA6NHY2 528 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 FAM74A7A6NL05 159 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 OR5K4A6NMS3 321 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 SELENOFO60613 162 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 TBL1XO60907 577 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ZNF821O75541 412 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 SLC2A10O95528 541 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 WDPCPO95876 746 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 TFP02787 698 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 PEPDP12955 493 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ATP1B2P14415 290 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 SMIM11AP58511 58 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 MEF2AQ02078 507 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 MLLT1Q03111 559 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 PTSQ03393 145 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 CRHR2Q13324 411 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 ZNF169Q14929 603 aaPredicted RBP6.37□□□□□ -1.39
VPS39-202ENST00000348544 SYPL1Q16563 259 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 FAM74A3Q4VXF1 159 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 LRRC73Q5JTD7 316 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 HACD4Q5VWC8 232 aa6.37□□□□□ -1.39
VPS39-202ENST00000348544 RETSATQ6NUM9 610 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms