RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 STYXQ8WUJ0 223 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 DCAKDQ8WVC6 231 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 METTL21AQ8WXB1 218 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CTNNBL1Q8WYA6 563 aaPredicted RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 AKAP1Q92667 903 aaKnown RBP eCLIP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 GFM2Q969S9 779 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 UBE2E3Q969T4 207 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ISOC1Q96CN7 298 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 KCNK16Q96T55 309 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 P2RX4Q99571 388 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 MED10Q9BTT4 135 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 RNF126Q9BV68 326 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 NAT10Q9H0A0 1025 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 IL25Q9H293 177 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 RAB6BQ9NRW1 208 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 PNO1Q9NRX1 252 aaKnown RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SYBUQ9NX95 663 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 MOCS1Q9NZB8 636 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ZNRD1Q9P1U0 126 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF69Q9UC07 566 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 MIOXQ9UGB7 285 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 CD300AQ9UGN4 299 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 RPS6KA6Q9UK32 745 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 AJAP1Q9UKB5 411 aaPredicted RBP1.31□□□□□ -2.2
LINC00643-201ENST00000334389 SLC9A8Q9Y2E8 581 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 ACOT9Q9Y305 439 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 DOCK10Q96BY6 2186 aa1.31□□□□□ -2.2
LINC00643-201ENST00000334389 TRBV23-1A0A0A0MS06 115 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SH3PXD2BA1X283 911 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 H0YJW9 148 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PANO1I0J062 215 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 VAMP5O95183 116 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CST3P01034 146 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 HSP90AA1P07900 732 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SLC35E2P0CK97 266 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RNH1P13489 461 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CTPS1P17812 591 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RPL22P35268 128 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 GFERP55789 205 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 GMFBP60983 142 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ACTR1AP61163 376 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 RHOAP61586 193 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 H3F3AP84243 136 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PMPCAQ10713 525 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CETN1Q12798 172 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TMED1Q13445 227 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 BMPR2Q13873 1038 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MPP2Q14168 576 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TMED2Q15363 201 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SSX2Q16385 188 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SLC22A10Q63ZE4 541 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FAM71F2Q6NXP2 309 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM64Q6YI46 380 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MON1BQ7L1V2 547 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 LRRC28Q86X40 367 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 WDTC1Q8N5D0 677 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TCTEX1D1Q8N7M0 179 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF615Q8N8J6 731 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CDYL2Q8N8U2 506 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 POMGNT2Q8NAT1 580 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 LINC00301Q8NCQ3 95 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 C11orf65Q8NCR3 313 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TMEM35BQ8NCS4 154 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CCDC54Q8NEL0 328 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 OR52K2Q8NGK3 314 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 OR13C5Q8NGS8 318 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PUM2Q8TB72 1066 aaKnown RBP eCLIP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NAT14Q8WUY8 206 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FRAT1Q92837 279 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MOAP1Q96BY2 351 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 HS6ST2Q96MM7 605 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 FOPNLQ96NB1 174 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NAP1L5Q96NT1 182 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 PANX3Q96QZ0 392 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CINPQ9BW66 212 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 TRIM15Q9C019 465 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 NMUR2Q9GZQ4 415 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SLC22A4Q9H015 551 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KLHL25Q9H0H3 589 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SIRPDQ9H106 197 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CNOT10Q9H9A5 744 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 GDPD2Q9HCC8 539 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MED4Q9NPJ6 270 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ESM1Q9NQ30 184 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF275Q9NSD4 429 aaPredicted RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 UFSP2Q9NUQ7 469 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 B3GNT2Q9NY97 397 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 SMARCAL1Q9NZC9 954 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KIF17Q9P2E2 1029 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 IL19Q9UHD0 177 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ZNF221Q9UK13 617 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 MRPS33Q9Y291 106 aaKnown RBP1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CAPN6Q9Y6Q1 641 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 VPS13CQ709C8 3753 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 CSPG4Q6UVK1 2322 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 KIR2DS1A0A191URI9 304 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 A1L4Q6 167 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 AGAP5A6NIR3 686 aa1.3□□□□□ -2.2
LINC00643-201ENST00000334389 ANKRD66B4E2M5 251 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms