RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PIGRP01833 764 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 GHRP10912 638 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 ETS1P14921 441 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 ARHGDIAP52565 204 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 SLC26A5P58743 744 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 HERVK_113P63132 956 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 ERVK-8P63133 956 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 IL9RQ01113 521 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 INAQ16352 499 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF239Q16600 458 aaKnown RBP2.59□□□□□ -1.99
HMGB1-201ENST00000326004 LCE1EQ5T753 118 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 C12orf60Q5U649 245 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 LIPKQ5VXJ0 399 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 OR6B2Q6IFH4 312 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 Q6ZR54 194 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 ADGRD2Q7Z7M1 963 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 ADCK1Q86TW2 530 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 GPBP1Q86WP2 473 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 ELMOD2Q8IZ81 293 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 SLC22A18ASQ8N1D0 253 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 ZNF397Q8NF99 534 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-201ENST00000326004 IPMKQ8NFU5 416 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 OR6T1Q8NGN1 323 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 DQX1Q8TE96 717 aaKnown RBP2.59□□□□□ -1.99
HMGB1-201ENST00000326004 CRYGNQ8WXF5 182 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 DLX4Q92988 240 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-201ENST00000326004 LHX4Q969G2 390 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 SYAP1Q96A49 352 aaPredicted RBP2.59□□□□□ -1.99
HMGB1-201ENST00000326004 CCDC51Q96ER9 411 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 C14orf79Q96F83 325 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 WRAP53Q9BUR4 548 aaKnown RBP2.59□□□□□ -1.99
HMGB1-201ENST00000326004 APOOQ9BUR5 198 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 ERVK-6Q9BXR3 956 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 NMNAT2Q9BZQ4 307 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 TSPY26PQ9H489 355 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.59□□□□□ -1.992e-6■□□□□ 10.8
HMGB1-201ENST00000326004 SLC7A10Q9NS82 523 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 XPO7Q9UIA9 1087 aaKnown RBP2.59□□□□□ -1.99
HMGB1-201ENST00000326004 DHRS7Q9Y394 339 aa2.59□□□□□ -1.99
HMGB1-201ENST00000326004 CFAP65Q6ZU64 1925 aaKnown RBP2.59□□□□□ -1.99
HMGB1-201ENST00000326004 KDM5AP29375 1690 aaKnown RBP2.59□□□□□ -2
HMGB1-201ENST00000326004 CARMIL1Q5VZK9 1371 aa2.59□□□□□ -2
HMGB1-201ENST00000326004 FMN1Q68DA7 1419 aa2.59□□□□□ -2
HMGB1-201ENST00000326004 GOLGA3Q08378 1498 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 NLRP1Q9C000 1473 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 TRAV9-2A0A087WT02 112 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 A0A0J9YVX5 310 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 LRIT2A6NDA9 550 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 TRIM64CA6NLI5 447 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 NPIPA2E9PIF3 369 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 RANBP6O60518 1105 aaKnown RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 SRPX2O60687 465 aaPredicted RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 ZNF253O75346 499 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 PRAMEF12O95522 483 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 PTBP3O95758 552 aaKnown RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 TGFAP01135 160 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 IGHV3-9P01782 118 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 HOXB7P09629 217 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 PVRP15151 417 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 AKT2P31751 481 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 DEKP35659 375 aaKnown RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 ASMTP46597 345 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 HMGCS2P54868 508 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 PPIAP62937 165 aaKnown RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 NOP14P78316 857 aaKnown RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 ZNF85Q03923 595 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 PDIA5Q14554 519 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 MICAQ29983 383 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 PARP6Q2NL67 630 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 ZNF699Q32M78 642 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 LRIT3Q3SXY7 679 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 ANKDD1AQ495B1 522 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 OLFML2AQ68BL7 652 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 PAQR9Q6ZVX9 377 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 TSEN54Q7Z6J9 526 aaKnown RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 ERICH1Q86X53 443 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 RNF148Q8N7C7 305 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 RHOXF1Q8NHV9 184 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 MRPL38Q96DV4 380 aaKnown RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 TRIM44Q96DX7 344 aaPredicted RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 FAM122AQ96E09 287 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 MCCC1Q96RQ3 725 aaPredicted RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 KCNK16Q96T55 309 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 TMEM231Q9H6L2 316 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 ALG9Q9H6U8 611 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 ADGRL4Q9HBW9 690 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 ESM1Q9NQ30 184 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 IMPAD1Q9NX62 359 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 CNOT2Q9NZN8 540 aaKnown RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 DHRS4-AS1Q9P1J3 65 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 ARMCX1Q9P291 453 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 RCOR3Q9P2K3 495 aaPredicted RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 CGNQ9P2M7 1197 aaKnown RBP2.58□□□□□ -2
HMGB1-201ENST00000326004 PLA2G4CQ9UP65 541 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 AURKCQ9UQB9 309 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 PLEKHA6Q9Y2H5 1048 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 FKBP7Q9Y680 259 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 ZNF318Q5VUA4 2279 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 MIA2Q96PC5 1412 aa2.58□□□□□ -2
HMGB1-201ENST00000326004 NKTRP30414 1462 aaKnown RBP2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms