RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 TMEM35AQ53FP2 167 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF546Q86UE3 836 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 LRRC28Q86X40 367 aaPredicted RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 OR5D16Q8NGK9 328 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 TAAR8Q969N4 342 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PAPOLGQ9BWT3 736 aaKnown RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 CPED1A4D0V7 1026 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 A8MU76 341 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 ANHXE9PGG2 379 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 JUPP14923 745 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF43P17038 809 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PREPP48147 710 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 CAMK2DQ13557 499 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 S100A7AQ86SG5 101 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 MED6O75586 246 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 MPC1LP0DKB6 136 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 OLIG2Q13516 323 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 C2orf27AQ580R0 203 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 MAMDC2Q7Z304 686 aaPredicted RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 SMAP2Q8WU79 429 aaPredicted RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 MAL2Q969L2 176 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 DDIT4LQ96D03 193 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 INTS6Q9UL03 887 aaKnown RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PCDHGA5Q9Y5G8 931 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 A0A1W2PRU2 124 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 EIF2DP41214 584 aaKnown RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 TATDN3Q17R31 274 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 UBE2NLQ5JXB2 153 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 SLC35F2Q8IXU6 374 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 DAZLQ92904 295 aaKnown RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 SUSD3Q96L08 255 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 GPR137BO60478 399 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 RPL17P18621 184 aaKnown RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 SNU13P55769 128 aaKnown RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PLCXD2Q0VAA5 305 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 CMIPQ8IY22 773 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 IQCF1Q8N6M8 205 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 SDSLQ96GA7 329 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 GAPDHSO14556 408 aaPredicted RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 MPPED1O15442 326 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 TP53P04637 393 aaPredicted RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 GMPRP36959 345 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 THBS3P49746 956 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 OR51Q1Q8NH59 317 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PXYLP1Q8TE99 480 aa13.18□□□□□ -0.3
CSPG4-201ENST00000308508 DPH2Q9BQC3 489 aaPredicted RBP13.18□□□□□ -0.3
CSPG4-201ENST00000308508 PPP3CBP16298 524 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 UBE2KP61086 200 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 C22orf39Q6P5X5 142 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 SULF2Q8IWU5 870 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 GATSQ8NAP1 163 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 TOMM40LQ969M1 308 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 MICU1Q9BPX6 476 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 GPR52Q9Y2T5 361 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 SLIT3O75094 1523 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 A0A1W2PPV4 95 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 RFXAPO00287 272 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 PIGRP01833 764 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 ARSBP15848 533 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 SGSHP51688 502 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 OR4D2P58180 307 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 GPR50Q13585 617 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 CEACAM7Q14002 265 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF791Q3KP31 576 aaPredicted RBP13.17□□□□□ -0.3
CSPG4-201ENST00000308508 RNF111Q6ZNA4 994 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 SMIM15Q7Z3B0 74 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 SIMC1Q8NDZ2 872 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 RBMXL1Q96E39 390 aaKnown RBP13.17□□□□□ -0.3
CSPG4-201ENST00000308508 TEPSINQ96N21 525 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 PCDHGA6Q9Y5G7 932 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 GALTP07902 379 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 FOXK1P85037 733 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 DGKZQ13574 1117 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 SSX9Q7RTT3 188 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 BRIX1Q8TDN6 353 aaKnown RBP13.17□□□□□ -0.3
CSPG4-201ENST00000308508 PPP1R14DQ9NXH3 145 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 MGAT3Q09327 533 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 PLGLAQ15195 96 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 PRRT3Q5FWE3 981 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 CELF5Q8N6W0 485 aaKnown RBP13.17□□□□□ -0.3
CSPG4-201ENST00000308508 TXNDC15Q96J42 360 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 NSUN5Q96P11 429 aaKnown RBP13.17□□□□□ -0.3
CSPG4-201ENST00000308508 ST6GALNAC5Q9BVH7 336 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 CD300LBA8K4G0 201 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 SERPINA5P05154 406 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 RPS15AP62244 130 aaKnown RBP13.17□□□□□ -0.3
CSPG4-201ENST00000308508 CREB3L2Q70SY1 520 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 ZNF100Q8IYN0 542 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 DCAF4L2Q8NA75 395 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 TMEM98Q9Y2Y6 226 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 KCTD3Q9Y597 815 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 GJE1A6NN92 205 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 S100A7P31151 101 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 MEF2AQ02078 507 aaPredicted RBP13.17□□□□□ -0.3
CSPG4-201ENST00000308508 DLX2Q07687 328 aaPredicted RBP13.17□□□□□ -0.3
CSPG4-201ENST00000308508 WASH6PQ9NQA3 447 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 SIX4Q9UIU6 781 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 ABCC6O95255 1503 aa13.17□□□□□ -0.3
CSPG4-201ENST00000308508 SRPX2O60687 465 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms