RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 PRDM14Q9GZV8 571 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 CENPHQ9H3R5 247 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 FBXL2Q9UKC9 423 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 CBLCQ9ULV8 474 aa13.13□□□□□ -0.31
HMGN3-201ENST00000275036 GXYLT2A0PJZ3 443 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 SCAMP2O15127 329 aaKnown RBP13.12□□□□□ -0.31
HMGN3-201ENST00000275036 FADS1O60427 444 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 CBR3O75828 277 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 IGKV1D-16P01601 117 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 SERPINE1P05121 402 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 GABRA1P14867 456 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 GPC1P35052 558 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 KRT20P35900 424 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 MAP3K8P41279 467 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 ASMTP46597 345 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 ZFP36L2P47974 494 aaKnown RBP13.12□□□□□ -0.31
HMGN3-201ENST00000275036 DLX5P56178 289 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 PSPHP78330 225 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 TLE4Q04727 773 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 CYP27C1Q4G0S4 372 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 ACSF3Q4G176 576 aaPredicted RBP13.12□□□□□ -0.31
HMGN3-201ENST00000275036 ATP6AP1LQ52LC2 224 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 PLCZ1Q86YW0 608 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 DMRTC2Q8IXT2 367 aaPredicted RBP13.12□□□□□ -0.31
HMGN3-201ENST00000275036 ZNF781Q8N8C0 355 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 HOXB13Q92826 284 aaPredicted RBP13.12□□□□□ -0.31
HMGN3-201ENST00000275036 MTERF3Q96E29 417 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 ZBED6CLQ96FA7 236 aaPredicted RBP13.12□□□□□ -0.31
HMGN3-201ENST00000275036 WDYHV1Q96HA8 205 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 SORT1Q99523 831 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 KCNJ16Q9NPI9 418 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 EQTNQ9NQ60 294 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 ACSS1Q9NUB1 689 aaPredicted RBP13.12□□□□□ -0.31
HMGN3-201ENST00000275036 NTMQ9P121 344 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 ATP6V1HQ9UI12 483 aa13.12□□□□□ -0.31
HMGN3-201ENST00000275036 ANKHD1Q8IWZ3 2542 aaKnown RBP13.12□□□□□ -0.31
HMGN3-201ENST00000275036 SPG11Q96JI7 2443 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 AHRRA9YTQ3 701 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 TMEM114B3SHH9 223 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 TM9SF1O15321 606 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 BIRC5O15392 142 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 SCO2O43819 266 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 HSPA4LO95757 839 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 IL33O95760 270 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 HOXD4P09016 255 aaPredicted RBP13.11□□□□□ -0.31
HMGN3-201ENST00000275036 ACP2P11117 423 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 LAMP1P11279 417 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 PRPS2P11908 318 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 GRK2P25098 689 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 SSTR2P30874 369 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 GABRA3P34903 492 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 EVI2BP34910 448 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 MANFP55145 182 aaKnown RBP13.11□□□□□ -0.31
HMGN3-201ENST00000275036 ABCE1P61221 599 aaKnown RBP13.11□□□□□ -0.31
HMGN3-201ENST00000275036 RIPPLY2Q5TAB7 128 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 IL23RQ5VWK5 629 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 POMZP3Q6PJE2 187 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 HOMEZQ8IX15 550 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 KRTCAP2Q8N6L1 136 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 FNDC5Q8NAU1 212 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 RELL2Q8NC24 303 aaPredicted RBP13.11□□□□□ -0.31
HMGN3-201ENST00000275036 NUP43Q8NFH3 380 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 TNIP2Q8NFZ5 429 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 ZFP28Q8NHY6 868 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 PPP1R14CQ8TAE6 165 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 FBXO30Q8TB52 745 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 PIK3R3Q92569 461 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 ABTB1Q969K4 478 aaPredicted RBP13.11□□□□□ -0.31
HMGN3-201ENST00000275036 PGM2Q96G03 612 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 Q9N2J8 555 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 SIRT3Q9NTG7 399 aaPredicted RBP13.11□□□□□ -0.31
HMGN3-201ENST00000275036 CAMK2AQ9UQM7 478 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 ACTL7BQ9Y614 415 aa13.11□□□□□ -0.31
HMGN3-201ENST00000275036 TEP1Q99973 2627 aaKnown RBP13.11□□□□□ -0.31
HMGN3-201ENST00000275036 HRNRQ86YZ3 2850 aaPredicted RBP13.1□□□□□ -0.31
HMGN3-201ENST00000275036 ANKRD17O75179 2603 aaKnown RBP13.1□□□□□ -0.31
HMGN3-201ENST00000275036 CELSR1Q9NYQ6 3014 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 CCDC168Q8NDH2 2452 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 NKX2-2O95096 273 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 EPPINO95925 133 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 TUBBP07437 444 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 BGNP21810 368 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 MAPK1P28482 360 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 SRD5A2P31213 254 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 HPCAL1P37235 193 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 PRKAG1P54619 331 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 GFRA1P56159 465 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 SNTB1Q13884 538 aaKnown RBP13.1□□□□□ -0.31
HMGN3-201ENST00000275036 ZNHIT3Q15649 155 aaPredicted RBP13.1□□□□□ -0.31
HMGN3-201ENST00000275036 PDCD2Q16342 344 aaPredicted RBP13.1□□□□□ -0.31
HMGN3-201ENST00000275036 DECR1Q16698 335 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 EXOSC6Q5RKV6 272 aaKnown RBP13.1□□□□□ -0.31
HMGN3-201ENST00000275036 LRIG3Q6UXM1 1119 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 APOOLQ6UXV4 268 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 R3HCC1LQ7Z5L2 792 aaKnown RBP13.1□□□□□ -0.31
HMGN3-201ENST00000275036 RIMKLAQ8IXN7 391 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 OR14L1PQ8NHC6 308 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 TUBGCP3Q96CW5 907 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 C16orf58Q96GQ5 468 aa13.1□□□□□ -0.31
HMGN3-201ENST00000275036 PPP1R36Q96LQ0 422 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms