RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 A8MUA0 341 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 IDSB3KWA1 339 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 KLK3P07288 261 aaPredicted RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 HEXBP07686 556 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 ZNF28P17035 718 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 RRM2P31350 389 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 PPP1R8Q12972 351 aaKnown RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 LARS2Q15031 903 aaKnown RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 TCTN3Q6NUS6 607 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 NPSR1Q6W5P4 371 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 GLRX5Q86SX6 157 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 COMTD1Q86VU5 262 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 VRK2Q86Y07 508 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 MORN4Q8NDC4 146 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 OR4D11Q8NGI4 311 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 RMND5BQ96G75 393 aaPredicted RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 LIN37Q96GY3 246 aaPredicted RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 RDH12Q96NR8 316 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 OR8D2Q9GZM6 311 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 WDR54Q9H977 334 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 Q9N2J8 555 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 TOR4AQ9NXH8 423 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 SMPD3Q9NY59 655 aaPredicted RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 NXT1Q9UKK6 140 aaKnown RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 ACAD8Q9UKU7 415 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 GPR55Q9Y2T6 319 aaPredicted RBP13.09□□□□□ -0.31
SS18-201ENST00000269137 LOXL2Q9Y4K0 774 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 LYVE1Q9Y5Y7 322 aa13.09□□□□□ -0.31
SS18-201ENST00000269137 DBIP07108 87 aaKnown RBP13.08□□□□□ -0.32
SS18-201ENST00000269137 PIGAP37287 484 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 PPICP45877 212 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 MED21Q13503 144 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 CCDC157Q569K6 752 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 LCN10Q6JVE6 187 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 ZNF517Q6ZMY9 492 aaPredicted RBP13.08□□□□□ -0.32
SS18-201ENST00000269137 CYP4Z1Q86W10 505 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 HS3ST5Q8IZT8 346 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 OR4C15Q8NGM1 316 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 OR1N1Q8NGS0 311 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 TFAP2CQ92754 450 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 SPSB2Q99619 263 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 ARHGDIGQ99819 225 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 ZPBPQ9BS86 351 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 ITPAQ9BY32 194 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 ACER3Q9NUN7 267 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 FBXO34Q9NWN3 711 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 SLC13A4Q9UKG4 626 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 ZNF443Q9Y2A4 671 aaPredicted RBP13.08□□□□□ -0.32
SS18-201ENST00000269137 CHST2Q9Y4C5 530 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 TESMINQ9Y4I5 508 aa13.08□□□□□ -0.32
SS18-201ENST00000269137 TNFRSF11BO00300 401 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 FFAR1O14842 300 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 CNOT3O75175 753 aaKnown RBP13.07□□□□□ -0.32
SS18-201ENST00000269137 ALOX12BO75342 701 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 CDK4P11802 303 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 YAP1P46937 504 aaKnown RBP13.07□□□□□ -0.32
SS18-201ENST00000269137 LIMS1P48059 325 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 EMP2P54851 167 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 GPR68Q15743 365 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 C6orf52Q5T4I8 152 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 DCAF12Q5T6F0 453 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 FIGNL1Q6PIW4 674 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 SHISA6Q6ZSJ9 500 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 LANCL3Q6ZV70 420 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 RAB11FIP2Q7L804 512 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 ANKRD37Q7Z713 158 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 HMGN2P46Q86SG4 172 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 MARVELD2Q8N4S9 558 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 ZNF321PQ8N8H1 164 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 ZSCAN1Q8NBB4 408 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 PMEPA1Q969W9 287 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 DHRS1Q96LJ7 313 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 WFDC6Q9BQY6 131 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 G6PC3Q9BUM1 346 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 NUDT9Q9BW91 350 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 ULBP3Q9BZM4 244 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 SOX17Q9H6I2 414 aaPredicted RBP13.07□□□□□ -0.32
SS18-201ENST00000269137 SMURF2Q9HAU4 748 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 KLHL28Q9NXS3 571 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 C3orf18Q9UK00 162 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 CBLCQ9ULV8 474 aa13.07□□□□□ -0.32
SS18-201ENST00000269137 OR6C76A6NM76 312 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 J3KTA2 159 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 M0R3H8 397 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 SEMA7AO75326 666 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 MT-CO3P00414 261 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 THRBP10828 461 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 IL7RP16871 459 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 DRD5P21918 477 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 PRKACGP22612 351 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 CDH12P55289 794 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 DCAF7P61962 342 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 EEF1A1P68104 462 aaKnown RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 SPIBQ01892 262 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 MERTKQ12866 999 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 TRIP6Q15654 476 aaKnown RBP13.06□□□□□ -0.32
SS18-201ENST00000269137 RFX4Q33E94 735 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 LIN52Q52LA3 116 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 EIPR1Q53HC9 387 aa13.06□□□□□ -0.32
SS18-201ENST00000269137 STPG1Q5TH74 334 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms