RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ASNA1O43681 348 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 XPNPEP2O43895 674 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 TFAP2AP05549 437 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 FMO3P31513 532 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 MAP4K2Q12851 820 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 GNA13Q14344 377 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 PEAR1Q5VY43 1037 aaPredicted RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 ZNF836Q6ZNA1 936 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 CCDC71Q8IV32 467 aaPredicted RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 ZNF675Q8TD23 568 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 RHBDD1Q8TEB9 315 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 PTPMT1Q8WUK0 201 aaPredicted RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 TMIGD2Q96BF3 282 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 GFM1Q96RP9 751 aaKnown RBP15.32■□□□□ 0.04
USP4-201ENST00000265560 FNDC11Q9BVV2 318 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 ITPAQ9BY32 194 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 OR10A5Q9H207 317 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 C8orf4Q9NR00 106 aa15.32■□□□□ 0.04
USP4-201ENST00000265560 A0A1B0GX78 115 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 KCNK2O95069 426 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 H1F0P07305 194 aaKnown RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 ELAVL4P26378 380 aaKnown RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 STT3AP46977 705 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 HSD17B7P56937 341 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 RGS8P57771 180 aaPredicted RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 RPP38P78345 283 aaKnown RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 POU6F2P78424 691 aaPredicted RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 INAVAQ3KP66 663 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 COLEC12Q5KU26 742 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 LCN10Q6JVE6 187 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 FAHD1Q6P587 224 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 THAP5Q7Z6K1 395 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 PRR22Q8IZ63 422 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 CEP76Q8TAP6 659 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 SPATA5L1Q9BVQ7 753 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 MTHFD2LQ9H903 347 aaPredicted RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 AMBNQ9NP70 447 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 ZNF443Q9Y2A4 671 aaPredicted RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 GMPPBQ9Y5P6 360 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 ADAMTS20P59510 1910 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 ZNF318Q5VUA4 2279 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 H0YAE9 185 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 STX11O75558 287 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 SCRG1O75711 98 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 UGT2B17O75795 530 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 CYP7B1O75881 506 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 CCNB2O95067 398 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 CCL4P13236 92 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 IDH2P48735 452 aaKnown RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 NPRL3Q12980 569 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 TTC23Q5W5X9 447 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 FAM199XQ6PEV8 388 aaPredicted RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 FAM181AQ8N9Y4 354 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 BPIFB6Q8NFQ5 453 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 EFHD2Q96C19 240 aaPredicted RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 GAL3ST4Q96RP7 486 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 CHRNA10Q9GZZ6 450 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 CLK4Q9HAZ1 481 aaKnown RBP15.31■□□□□ 0.04
USP4-201ENST00000265560 FANCEQ9HB96 536 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 BATF3Q9NR55 127 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 CLCA3PQ9Y6N3 262 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 SDK2Q58EX2 2172 aa15.31■□□□□ 0.04
USP4-201ENST00000265560 TEX51A0A1B0GUA7 166 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 SYPP08247 313 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 LINGO3P0C6S8 592 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 TAS2R41P59536 307 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 NDUFAF6Q330K2 333 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 LAIR1Q6GTX8 287 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 LAIR2Q6ISS4 152 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 PODNL1Q6PEZ8 512 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 PEX5LQ8IYB4 626 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 OR4D9Q8NGE8 314 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 RASSF5Q8WWW0 418 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 SEMA4GQ9NTN9 838 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 OR10H1Q9Y4A9 318 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 DSPPQ9NZW4 1301 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 GMFGO60234 142 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 CKMT1AP12532 417 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 ISL1P61371 349 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 DSG2Q14126 1118 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 PROX2Q3B8N5 592 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 FLYWCH1Q4VC44 716 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 DCST1Q5T197 706 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 PDZK1Q5T2W1 519 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 MRPL2Q5T653 305 aaKnown RBP15.3■□□□□ 0.04
USP4-201ENST00000265560 GATSQ8NAP1 163 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 ADAMTS16Q8TE57 1224 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 BTBD2Q9BX70 525 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 PINK1Q9BXM7 581 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 VN1R1Q9GZP7 353 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 GABARAPL1Q9H0R8 117 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 ZNF696Q9H7X3 374 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 MAN2C1Q9NTJ4 1040 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 SEMA5BQ9P283 1151 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 DSCR3O14972 297 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 KHNYNO15037 678 aaKnown RBP15.3■□□□□ 0.04
USP4-201ENST00000265560 CT45A8P0DMV1 189 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 CT45A9P0DMV2 189 aa15.3■□□□□ 0.04
USP4-201ENST00000265560 HOXB6P17509 224 aaKnown RBP15.3■□□□□ 0.04
USP4-201ENST00000265560 RYKP34925 604 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms