RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 RAP1AP62834 184 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 MAP4K2Q12851 820 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 GPR50Q13585 617 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 PRAMEF19Q5SWL8 479 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 GPR155Q7Z3F1 870 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 TICAM1Q8IUC6 712 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 OR1M1Q8NGA1 313 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 OR52E2Q8NGJ4 325 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 OR10R2Q8NGX6 335 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 ALG3Q92685 438 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 MRPL15Q9P015 296 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 STEAP1Q9UHE8 339 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 NUDT1P36639 197 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 RPS15AP62244 130 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 HTRA4P83105 476 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 NGBQ9NPG2 151 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 TRIM23P36406 574 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 OGDHQ02218 1023 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 BAMBIQ13145 260 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 SIRPB2Q5JXA9 342 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 EPGNQ6UW88 154 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 OR6F1Q8NGZ6 308 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF417Q8TAU3 575 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 ELP4Q96EB1 424 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 PMM2O15305 246 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 ARSBP15848 533 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 MAP3K3Q99759 626 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 SCO2O43819 266 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 UBL4AP11441 157 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 FLI1Q01543 452 aaPredicted RBP13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 RFPL4BQ6ZWI9 263 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 KATNB1Q9BVA0 655 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 SLC31A2O15432 143 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 FAM189A1O60320 539 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 GALTP07902 379 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 MMP2P08253 660 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 ACTBL2Q562R1 376 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 LRRC73Q5JTD7 316 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 ADGRF1Q5T601 910 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 FAM162BQ5T6X4 162 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 PPM1HQ9ULR3 514 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 TSPAN6O43657 245 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 ARHGEF15O94989 841 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 HEXAP06865 529 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 G6PDP11413 515 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 FCER1GP30273 86 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 EPHA4P54764 986 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 OR4D2P58180 307 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 SF3A2Q15428 464 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 CACNG2Q9Y698 323 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 KLHL33A6NCF5 533 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 CCL22O00626 93 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 TOX4O94842 621 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 KCNK2O95069 426 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 HADHBP55084 474 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 DNAJB13P59910 316 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 HNF4GQ14541 408 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 CTSL3PQ5NE16 218 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 IL31RAQ8NI17 732 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 TLCD1Q96CP7 247 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 LRCH3Q96II8 777 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 NUDT9Q9BW91 350 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 IL17RBQ9NRM6 502 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 A8MT66 165 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 SBK2P0C263 348 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 OR1E2P47887 323 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 MRPS34P82930 218 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 DPPA2Q7Z7J5 298 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 CPNE7Q9UBL6 633 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 YTHDF2Q9Y5A9 579 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 POP7O75817 140 aaKnown RBP13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 CKMT1AP12532 417 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 TAP2Q03519 686 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 GAREM2Q75VX8 874 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 PTCHD1Q96NR3 888 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF160Q9HCG1 818 aa13.26□□□□□ -0.29
CCDC88A-201ENST00000263630 ITM2AO43736 263 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 LCATP04180 440 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 TBPP20226 339 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 CRYZQ08257 329 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 PAGE3Q5JUK9 113 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 TPPP3Q9BW30 176 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 HRH4Q9H3N8 390 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 A0A1W2PPH5 198 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 RPS21P63220 83 aaKnown RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 LRRC55Q6ZSA7 311 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 LRR1Q96L50 414 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 LMF1Q96S06 567 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 SLC39A9Q9NUM3 307 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 C1orf123Q9NWV4 160 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 DLC1Q96QB1 1528 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 GAPDHSO14556 408 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 FKBP1BP68106 108 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 LEG1Q6P5S2 330 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 CHCHD4Q8N4Q1 142 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 SUMF1Q8NBK3 374 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 TRIB3Q96RU7 358 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 RHCGQ9UBD6 479 aa13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 MAFBQ9Y5Q3 323 aaPredicted RBP13.25□□□□□ -0.29
CCDC88A-201ENST00000263630 A0A1W2PQL4 384 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms