RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CXXC1Q9P0U4 656 aaPredicted RBP17.53■□□□□ 0.4
CPSF3-201ENST00000238112 PRKAG2Q9UGJ0 569 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 HPGDSO60760 199 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 LALBAP00709 142 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 CELP19835 753 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 APEX1P27695 318 aaKnown RBP17.53■□□□□ 0.4
CPSF3-201ENST00000238112 KIR2DL3P43628 341 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 GPR4P46093 362 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 DECR1Q16698 335 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 PLET1Q6UQ28 207 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 FBXL6Q8N531 539 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 TMEM145Q8NBT3 493 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 OR2L3Q8NG85 312 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 LILRB4Q8NHJ6 448 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 NEIL3Q8TAT5 605 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 KAT2AQ92830 837 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 TIMM29Q9BSF4 260 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 RANGRFQ9HD47 186 aaPredicted RBP17.53■□□□□ 0.4
CPSF3-201ENST00000238112 H2AFY2Q9P0M6 372 aaPredicted RBP17.53■□□□□ 0.4
CPSF3-201ENST00000238112 MALT1Q9UDY8 824 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 MOSPD1Q9UJG1 213 aa17.53■□□□□ 0.4
CPSF3-201ENST00000238112 DENND4AQ7Z401 1863 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 PAK4O96013 591 aaPredicted RBP17.52■□□□□ 0.4
CPSF3-201ENST00000238112 MLLT3P42568 568 aaPredicted RBP17.52■□□□□ 0.4
CPSF3-201ENST00000238112 MAP2K3P46734 347 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 ARFIP1P53367 373 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 PDGFRLQ15198 375 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.52■□□□□ 0.4
CPSF3-201ENST00000238112 PGGHGQ32M88 737 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 NRMQ8IXM6 262 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 ADAMTS15Q8TE58 950 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 MCHR1Q99705 422 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 YIPF2Q9BWQ6 316 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 ACTRT3Q9BYD9 372 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 C11orf49Q9H6J7 331 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 CACYBPQ9HB71 228 aaKnown RBP17.52■□□□□ 0.4
CPSF3-201ENST00000238112 MED17Q9NVC6 651 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 PAQR5Q9NXK6 330 aaPredicted RBP17.52■□□□□ 0.4
CPSF3-201ENST00000238112 IL20Q9NYY1 176 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 THAP10Q9P2Z0 257 aaPredicted RBP17.52■□□□□ 0.4
CPSF3-201ENST00000238112 DPP7Q9UHL4 492 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 CHST2Q9Y4C5 530 aa17.52■□□□□ 0.4
CPSF3-201ENST00000238112 MYO10Q9HD67 2058 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 TRPM6Q9BX84 2022 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 GABRPO00591 440 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 PROM1O43490 865 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 YES1P07947 543 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 TSFMP43897 325 aaKnown RBP17.52■□□□□ 0.39
CPSF3-201ENST00000238112 IL18Q14116 193 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 LRRC32Q14392 662 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF791Q3KP31 576 aaPredicted RBP17.52■□□□□ 0.39
CPSF3-201ENST00000238112 METAP1DQ6UB28 335 aaPredicted RBP17.52■□□□□ 0.39
CPSF3-201ENST00000238112 NOXA1Q86UR1 476 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 ARIH2OSQ8N7S6 290 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 C12orf76Q8N812 135 aaPredicted RBP17.52■□□□□ 0.39
CPSF3-201ENST00000238112 SLC41A3Q96GZ6 507 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 ASB16Q96NS5 453 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 ATF6BQ99941 703 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 NTNG1Q9Y2I2 539 aa17.52■□□□□ 0.39
CPSF3-201ENST00000238112 GSAPA4D1B5 854 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 AGRPO00253 132 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 HTR1FP30939 366 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 PDX1P52945 283 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 STXBP1P61764 594 aaKnown RBP17.51■□□□□ 0.39
CPSF3-201ENST00000238112 CAMK1Q14012 370 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 LTB4RQ15722 352 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 CST6Q15828 149 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 MZT2BQ6NZ67 158 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 MZT2AQ6P582 158 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF620Q6ZNG0 422 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 TRIM48Q8IWZ4 208 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 SPRYD4Q8WW59 207 aaPredicted RBP17.51■□□□□ 0.39
CPSF3-201ENST00000238112 SMARCD2Q92925 531 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 CHFRQ96EP1 664 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 FYTTD1Q96QD9 318 aaKnown RBP17.51■□□□□ 0.39
CPSF3-201ENST00000238112 DCLRE1CQ96SD1 692 aaKnown RBP17.51■□□□□ 0.39
CPSF3-201ENST00000238112 SECISBP2Q96T21 854 aaKnown RBP17.51■□□□□ 0.39
CPSF3-201ENST00000238112 TMEM246Q9BRR3 403 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 APOBEC3BQ9UH17 382 aaKnown RBP17.51■□□□□ 0.39
CPSF3-201ENST00000238112 IL20RAQ9UHF4 553 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 EXOGQ9Y2C4 368 aaKnown RBP17.51■□□□□ 0.39
CPSF3-201ENST00000238112 PLEKHM1Q9Y4G2 1056 aa17.51■□□□□ 0.39
CPSF3-201ENST00000238112 FCMRO60667 390 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 NCR1O76036 304 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 ASGR2P07307 311 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 PRKAR1AP10644 381 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 CMPK1P30085 196 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 WASP42768 502 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 CD83Q01151 205 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 MBOAT2Q6ZWT7 520 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 GDF7Q7Z4P5 450 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 NRROSQ86YC3 692 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 SIMC1Q8NDZ2 872 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 BBS1Q8NFJ9 593 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 OR2T33Q8NG76 320 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 OR52N1Q8NH53 320 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 SP7Q8TDD2 431 aaPredicted RBP17.5■□□□□ 0.39
CPSF3-201ENST00000238112 TMEM255BQ8WV15 326 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 OTULINQ96BN8 352 aa17.5■□□□□ 0.39
CPSF3-201ENST00000238112 ZNF681Q96N22 645 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms