RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 OR2M5A3KFT3 312 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 SERINC4A6NH21 518 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 OR6C70A6NIJ9 312 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 BANF1O75531 89 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 VENTXO95231 258 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 KRT14P02533 472 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 PYGBP11216 843 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 XKP51811 444 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 MGAT2Q10469 447 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 GGTLC2Q14390 218 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 RAB35Q15286 201 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.94□□□□□ -0.34
CLN3-249ENST00000636685 TEDDM1Q5T9Z0 273 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 CYP20A1Q6UW02 462 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 GALNT7Q86SF2 657 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 GBP7Q8N8V2 638 aaPredicted RBP12.94□□□□□ -0.34
CLN3-249ENST00000636685 BANPQ8N9N5 519 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 HUS1BQ8NHY5 278 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 PIWIL2Q8TC59 973 aaKnown RBP12.94□□□□□ -0.34
CLN3-249ENST00000636685 UBE2E3Q969T4 207 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 ADOQ96SZ5 270 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 PRR14Q9BWN1 585 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 BRINP2Q9C0B6 783 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 CNOT10Q9H9A5 744 aaKnown RBP12.94□□□□□ -0.34
CLN3-249ENST00000636685 CORO1CQ9ULV4 474 aaPredicted RBP12.94□□□□□ -0.34
CLN3-249ENST00000636685 SNX8Q9Y5X2 465 aa12.94□□□□□ -0.34
CLN3-249ENST00000636685 NOTCH1P46531 2555 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 CCNT2O60583 730 aaKnown RBP12.93□□□□□ -0.34
CLN3-249ENST00000636685 GCM2O75603 506 aaPredicted RBP12.93□□□□□ -0.34
CLN3-249ENST00000636685 NTN1O95631 604 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 TGFAP01135 160 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 GBAP04062 536 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 CPMP14384 443 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 IL32P24001 234 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 BSGP35613 385 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 E2F2Q14209 437 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 TCAIMQ8N3R3 496 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 FADS6Q8N9I5 356 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 OR2M3Q8NG83 312 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 OR4K14Q8NGD5 310 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 HSD17B8Q92506 261 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 C3orf49Q96BT1 292 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 CERS2Q96G23 380 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 CENPKQ9BS16 269 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 PPANQ9NQ55 473 aaKnown RBP12.93□□□□□ -0.34
CLN3-249ENST00000636685 FBXO34Q9NWN3 711 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 XPR1Q9UBH6 696 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 CFL2Q9Y281 166 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 ZKSCAN5Q9Y2L8 839 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 PLLPQ9Y342 182 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 CMYA5Q8N3K9 4069 aa12.93□□□□□ -0.34
CLN3-249ENST00000636685 TO15178 435 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 LY6HO94772 140 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 FGGP02679 453 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 DRD5P21918 477 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 SERPINB1P30740 379 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 PPICP45877 212 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 EIF1AXP47813 144 aaKnown RBP12.92□□□□□ -0.34
CLN3-249ENST00000636685 COMPP49747 757 aaPredicted RBP12.92□□□□□ -0.34
CLN3-249ENST00000636685 TAS2R39P59534 338 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 ACTG1P63261 375 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 SLMAPQ14BN4 828 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 PRICKLE4Q2TBC4 344 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 SPANXN3Q5MJ09 141 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 MFSD12Q6NUT3 480 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 GGNQ86UU5 652 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 SPATA6LQ8N4H0 392 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 SLC35A4Q96G79 324 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 HBEGFQ99075 208 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 MTERF1Q99551 399 aaKnown RBP12.92□□□□□ -0.34
CLN3-249ENST00000636685 HDHD5Q9BXW7 423 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 DDX31Q9H8H2 851 aaKnown RBP12.92□□□□□ -0.34
CLN3-249ENST00000636685 SMYD2Q9NRG4 433 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 CBLN4Q9NTU7 201 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 MAT2BQ9NZL9 334 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 MED11Q9P086 117 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 PPP4R1LQ9P1A2 415 aa12.92□□□□□ -0.34
CLN3-249ENST00000636685 ARFGEF3Q5TH69 2177 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 HEATR1Q9H583 2144 aaKnown RBP12.91□□□□□ -0.34
CLN3-249ENST00000636685 SHISA8B8ZZ34 492 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 EIF1AYO14602 144 aaKnown RBP12.91□□□□□ -0.34
CLN3-249ENST00000636685 SCO2O43819 266 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 TSPAN2O60636 221 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 CBX7O95931 251 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 APEHP13798 732 aaKnown RBP12.91□□□□□ -0.34
CLN3-249ENST00000636685 PORP16435 677 aaPredicted RBP12.91□□□□□ -0.34
CLN3-249ENST00000636685 TTKP33981 857 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 SRP14P37108 136 aaKnown RBP12.91□□□□□ -0.34
CLN3-249ENST00000636685 SFRP5Q5T4F7 317 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 SULT1C3Q6IMI6 304 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 IGDCC3Q8IVU1 814 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 GABRG1Q8N1C3 465 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 NAT8LQ8N9F0 302 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 OR52R1Q8NGF1 315 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 RNF138Q8WVD3 245 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 PLAC1Q9HBJ0 212 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 ZBTB26Q9HCK0 441 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 ASIC3Q9UHC3 531 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 ZNF639Q9UID6 485 aa12.91□□□□□ -0.34
CLN3-249ENST00000636685 AP4B1Q9Y6B7 739 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms