RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 DEFB127Q9H1M4 99 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 GPR45Q9Y5Y3 372 aa18.99■□□□□ 0.63
CLN3-240ENST00000631023 USP9XQ93008 2570 aaPredicted RBP18.99■□□□□ 0.63
CLN3-240ENST00000631023 GIMAP1-GIMAP5A0A087WTJ2 511 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 PRSS51A0A1B0GVH4 220 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 E9PBE3 544 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 UBDO15205 165 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 ATP8B1O43520 1251 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 CDC40O60508 579 aaKnown RBP eCLIP18.98■□□□□ 0.63
CLN3-240ENST00000631023 AGFG2O95081 481 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 STSP08842 583 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 S100A3P33764 101 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 PRIM2P49643 509 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 SLC10A1Q14973 349 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 GSTA3Q16772 222 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 CMPK2Q5EBM0 449 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 BICRALQ6AI39 1079 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 BHLHB9Q6PI77 547 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 WDR53Q7Z5U6 358 aaPredicted RBP18.98■□□□□ 0.63
CLN3-240ENST00000631023 TMEM251Q8N6I4 163 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 OR56A1Q8NGH5 318 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 SLC9A6Q92581 669 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 GIMAP5Q96F15 307 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 ZDHHC11Q9H8X9 412 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 MED4Q9NPJ6 270 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 KLRF1Q9NZS2 232 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 SLC5A6Q9Y289 635 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 A0A1B0GUH1 482 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 CLEC18AA5D8T8 446 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 SLC19A2O60779 497 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 TRIM3O75382 744 aaPredicted RBP18.98■□□□□ 0.63
CLN3-240ENST00000631023 KCNH1O95259 989 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 NME5P56597 212 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 UFM1P61960 85 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 HBA1P69905 142 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 MFSD12Q6NUT3 480 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 CLEC18BQ6UXF7 455 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 CLEC18CQ8NCF0 446 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 GLB1L3Q8NCI6 653 aaPredicted RBP18.98■□□□□ 0.63
CLN3-240ENST00000631023 SFXN5Q8TD22 340 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 HOXB13Q92826 284 aaPredicted RBP18.98■□□□□ 0.63
CLN3-240ENST00000631023 EFHD2Q96C19 240 aaPredicted RBP18.98■□□□□ 0.63
CLN3-240ENST00000631023 OR52B2Q96RD2 323 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 NODALQ96S42 347 aa18.98■□□□□ 0.63
CLN3-240ENST00000631023 SPTBN1Q01082 2364 aaKnown RBP18.97■□□□□ 0.63
CLN3-240ENST00000631023 PRAMEF25A6NGN4 478 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 POLR3GO15318 223 aaPredicted RBP18.97■□□□□ 0.63
CLN3-240ENST00000631023 ICOSLGO75144 302 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 PDE9AO76083 593 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 SOX30O94993 753 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 NKX2-2O95096 273 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 KRT16P08779 473 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 ALOX5P09917 674 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 ABOP16442 354 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 ELAVL4P26378 380 aaKnown RBP18.97■□□□□ 0.63
CLN3-240ENST00000631023 MAP3K8P41279 467 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 MAGEA5P43359 124 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 WNT3P56703 355 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 TP53BP2Q13625 1128 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 FAM174BQ3ZCQ3 159 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 PDCD4Q53EL6 469 aaKnown RBP18.97■□□□□ 0.63
CLN3-240ENST00000631023 SPANXN4Q5MJ08 99 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 DESI1Q6ICB0 168 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 ARHGAP11AQ6P4F7 1023 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 SPPL2CQ8IUH8 684 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 JADE3Q92613 823 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 TMEM41AQ96HV5 264 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 OSBPL11Q9BXB4 747 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 CXorf36Q9H7Y0 433 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 TCF7L2Q9NQB0 619 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 PLSCR2Q9NRY7 297 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 FAM120CQ9NX05 1096 aaKnown RBP18.97■□□□□ 0.63
CLN3-240ENST00000631023 QPCTLQ9NXS2 382 aa18.97■□□□□ 0.63
CLN3-240ENST00000631023 FAF1Q9UNN5 650 aaPredicted RBP18.97■□□□□ 0.63
CLN3-240ENST00000631023 IL33O95760 270 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 HMGN2P05204 90 aaKnown RBP18.96■□□□□ 0.63
CLN3-240ENST00000631023 SOAT1P35610 550 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 C4orf17Q53FE4 359 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 CLECL1Q8IZS7 167 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 SLC16A11Q8NCK7 471 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 OR4A15Q8NGL6 344 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 ACTRT3Q9BYD9 372 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 LDAHQ9H6V9 325 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 ZNF835Q9Y2P0 537 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 PCNX3Q9H6A9 2034 aa18.96■□□□□ 0.63
CLN3-240ENST00000631023 TRGV8A0A0C4DH27 118 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 A0A1B0GTH9 108 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 LRRC3CA6NJW4 275 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 LRRTM2O43300 516 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 SEMA7AO75326 666 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 SLC22A3O75751 556 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 IDH3AP50213 366 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 AQP5P55064 265 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 HSF1Q00613 529 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 SRSF1Q07955 248 aaKnown RBP eCLIP18.95■□□□□ 0.62
CLN3-240ENST00000631023 LRRC74AQ0VAA2 488 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 LASP1Q14847 261 aaKnown RBP18.95■□□□□ 0.62
CLN3-240ENST00000631023 TIGD3Q6B0B8 471 aa18.95■□□□□ 0.62
CLN3-240ENST00000631023 Q6ZPB1 254 aaPredicted RBP18.95■□□□□ 0.62
CLN3-240ENST00000631023 OR1J4Q8NGS1 313 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms