RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PHC1P78364 1004 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 PSG6Q00889 435 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 DECR1Q16698 335 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 AGKQ53H12 422 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 PRAMEF20Q5VT98 475 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 ZCCHC12Q6PEW1 402 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 DNAJC14Q6Y2X3 702 aaPredicted RBP16.63■□□□□ 0.25
CLN3-239ENST00000628023 SULF2Q8IWU5 870 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 TRIML2Q8N7C3 387 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 BCORP1Q8N888 145 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 DIO2Q92813 273 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 GIMAP5Q96F15 307 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 C16orf58Q96GQ5 468 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 CCDC115Q96NT0 180 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 BARD1Q99728 777 aaKnown RBP16.63■□□□□ 0.25
CLN3-239ENST00000628023 FAM107BQ9H098 131 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 KLHL14Q9P2G3 628 aa16.63■□□□□ 0.25
CLN3-239ENST00000628023 ERRFI1Q9UJM3 462 aaPredicted RBP16.63■□□□□ 0.25
CLN3-239ENST00000628023 MRTO4Q9UKD2 239 aaKnown RBP16.63■□□□□ 0.25
CLN3-239ENST00000628023 WIPF3A6NGB9 483 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 CCDC154A6NI56 674 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 SCN2BO60939 215 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 KCNH1O95259 989 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 CRYABP02511 175 aaKnown RBP16.62■□□□□ 0.25
CLN3-239ENST00000628023 RNF224P0DH78 156 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 NAGAP17050 411 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 UQCRC2P22695 453 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 LSP1P33241 339 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 CHI3L1P36222 383 aaPredicted RBP16.62■□□□□ 0.25
CLN3-239ENST00000628023 GNGT1P63211 74 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 KCNJ2P63252 427 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 PLGLB1Q02325 96 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 CYP27C1Q4G0S4 372 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 ANGPTL8Q6UXH0 198 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 GK5Q6ZS86 529 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 CLEC4FQ8N1N0 589 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 FBXW8Q8N3Y1 598 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 CPSF7Q8N684 471 aaKnown RBP16.62■□□□□ 0.25
CLN3-239ENST00000628023 COX18Q8N8Q8 333 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 ST6GALNAC3Q8NDV1 305 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 OR4N2Q8NGD1 307 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 GRHL3Q8TE85 626 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 PAQR8Q8TEZ7 354 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 PIK3R3Q92569 461 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 VPS33AQ96AX1 596 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 EFHD2Q96C19 240 aaPredicted RBP16.62■□□□□ 0.25
CLN3-239ENST00000628023 OTUB1Q96FW1 271 aaPredicted RBP16.62■□□□□ 0.25
CLN3-239ENST00000628023 SLC35G5Q96KT7 338 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 COL21A1Q96P44 957 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 ADOQ96SZ5 270 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 SLC35A5Q9BS91 424 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 METTL7AQ9H8H3 244 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 OLAHQ9NV23 265 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 CNIH4Q9P003 139 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 CBLCQ9ULV8 474 aa16.62■□□□□ 0.25
CLN3-239ENST00000628023 CHCHD2Q9Y6H1 151 aaPredicted RBP16.62■□□□□ 0.25
CLN3-239ENST00000628023 DOPEY1Q5JWR5 2465 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 RFXANKO14593 260 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 HS6ST1O60243 411 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 ABCB7O75027 752 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 ANP32DO95626 131 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 LDLRP01130 860 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 ACP2P11117 423 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 CNR1P21554 472 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 DNASE1L1P49184 302 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 PSMD4P55036 377 aaKnown RBP16.61■□□□□ 0.25
CLN3-239ENST00000628023 PER3P56645 1201 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 MRPS22P82650 360 aaKnown RBP16.61■□□□□ 0.25
CLN3-239ENST00000628023 GAB1Q13480 694 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 EFR3AQ14156 821 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 RCAN2Q14206 197 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 C6orf10Q5SRN2 563 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 METTL21CQ5VZV1 264 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 ZNF621Q6ZSS3 439 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 MSANTD1Q6ZTZ1 278 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 NUP54Q7Z3B4 507 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 POGLUT1Q8NBL1 392 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 SLC16A11Q8NCK7 471 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 SPPL2AQ8TCT8 520 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 ADAMTS15Q8TE58 950 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 TMCO6Q96DC7 493 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 RMND5BQ96G75 393 aaPredicted RBP16.61■□□□□ 0.25
CLN3-239ENST00000628023 ITCHQ96J02 903 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 FRMD6Q96NE9 622 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 TAAR6Q96RI8 345 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 FAM173AQ9BQD7 235 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 INPP5KQ9BT40 448 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 ACTRT3Q9BYD9 372 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 DEPPQ9NTK1 212 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 NTNG1Q9Y2I2 539 aa16.61■□□□□ 0.25
CLN3-239ENST00000628023 NUP214P35658 2090 aaPredicted RBP16.61■□□□□ 0.25
CLN3-239ENST00000628023 A0A0G2JMM0 328 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 A0A1W2PPB8 328 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 A0A1W2PRS3 328 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 GXYLT2A0PJZ3 443 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 OR6C70A6NIJ9 312 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 KIR3DP1A8MWS1 328 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 UGT2B11O75310 529 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 NKX2-2O95096 273 aa16.6■□□□□ 0.25
CLN3-239ENST00000628023 ZNF24P17028 368 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms