RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 ASB12Q8WXK4 309 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 SLC6A18Q96N87 628 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 FUZQ9BT04 418 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 SPATA5L1Q9BVQ7 753 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 ACTRT3Q9BYD9 372 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 IL21RQ9HBE5 538 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 NECTIN3Q9NQS3 549 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 LYARQ9NX58 379 aaKnown RBP9.94□□□□□ -0.82
CUX1-221ENST00000622516 PILRAQ9UKJ1 303 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 CCDC85CA6NKD9 419 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 TNFRSF10CO14798 259 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 GKN3PP0CG01 181 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 NT5EP21589 574 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 DGUOKQ16854 277 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 ATAD3BQ5T9A4 648 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 MFSD12Q6NUT3 480 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 FIGNL1Q6PIW4 674 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SHFQ7M4L6 423 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 NANOGNBQ7Z5D8 188 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CROCCP3Q8IVE0 287 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SFXN5Q8TD22 340 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 RNF31Q96EP0 1072 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 Q96MT0 163 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 FAM117AQ9C073 453 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 C6orf62Q9GZU0 229 aaPredicted RBP9.93□□□□□ -0.82
CUX1-221ENST00000622516 DOLKQ9UPQ8 538 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CARD8Q9Y2G2 431 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 IFT52Q9Y366 437 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SPAG17Q6Q759 2223 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 KRBA1A5PL33 1030 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CNOT3O75175 753 aaKnown RBP9.93□□□□□ -0.82
CUX1-221ENST00000622516 CYP7B1O75881 506 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 BMP4P12644 408 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CPMP14384 443 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 ST6GAL1P15907 406 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 RGS6P49758 472 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 HHEXQ03014 270 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 ERV3-1Q14264 604 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 FZD2Q14332 565 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 FAM214AQ32MH5 1076 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 ENTPD8Q5MY95 495 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 FRRS1Q6ZNA5 592 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 FAM92BQ6ZTR7 304 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 NT5CQ8TCD5 201 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PPP1R14BQ96C90 147 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PRRC1Q96M27 445 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SERINC2Q96SA4 455 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 MGLLQ99685 303 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PSD2Q9BQI7 771 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 BTBD2Q9BX70 525 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SLIRPQ9GZT3 109 aaKnown RBP9.93□□□□□ -0.82
CUX1-221ENST00000622516 C8orf33Q9H7E9 229 aaPredicted RBP9.93□□□□□ -0.82
CUX1-221ENST00000622516 WDR45Q9Y484 360 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SLC22A7Q9Y694 548 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PCDH15Q96QU1 1955 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 ARRDC5A6NEK1 342 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PRAMEF26H0Y7S4 382 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PEX12O00623 359 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 LRRTM2O43300 516 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PIP5K1CO60331 668 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 RDH16O75452 317 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 THY1P04216 161 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CT62P0C5K7 136 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CCNYL3P0C7X3 344 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SMIM10L1P0DMW3 83 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PRG2P13727 222 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 FUT1P19526 365 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 TLX1P31314 330 aaPredicted RBP9.93□□□□□ -0.82
CUX1-221ENST00000622516 TSFMP43897 325 aaKnown RBP9.93□□□□□ -0.82
CUX1-221ENST00000622516 GPR4P46093 362 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 GIPRP48546 466 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 MAZP56270 477 aaKnown RBP9.93□□□□□ -0.82
CUX1-221ENST00000622516 RGS8P57771 180 aaPredicted RBP9.93□□□□□ -0.82
CUX1-221ENST00000622516 YPEL5P62699 121 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 IFITM3Q01628 133 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CEBPEQ15744 281 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SNAPC1Q16533 368 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 MAPK14Q16539 360 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SLX4IPQ5VYV7 408 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PLAG1Q6DJT9 500 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 ZNF730Q6ZMV8 503 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 DGAT2L6Q6ZPD8 337 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SLC46A3Q7Z3Q1 461 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 ZNF554Q86TJ5 538 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CSNK1A1LQ8N752 337 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 AVL9Q8NBF6 648 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CAMKVQ8NCB2 501 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 OR9A4Q8NGU2 314 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 SMIM10Q96HG1 83 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 LRR1Q96L50 414 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 NECTIN4Q96NY8 510 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 CCDC3Q9BQI4 270 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 TSSK6Q9BXA6 273 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 PINK1Q9BXM7 581 aa9.93□□□□□ -0.82
CUX1-221ENST00000622516 UNC13CQ8NB66 2214 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 SPTY2D1-AS1A0A0U1RR47 76 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 FAM170BA6NMN3 283 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 C2orf74A8MZ97 194 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 CLDN25C9JDP6 229 aa9.92□□□□□ -0.82
CUX1-221ENST00000622516 BOLA2-SMG1P6H3BVE0 249 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms