RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 Q6ZPB1 254 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 RPL3LQ92901 407 aaKnown RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 ACTR6Q9GZN1 396 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 KLHL42Q9P2K6 505 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 DHDHQ9UQ10 334 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 C14orf166Q9Y224 244 aaKnown RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 GPR89AB7ZAQ6 455 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 UPK1BO75841 260 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 MAS1P04201 325 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 GPR89BP0CG08 455 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 PIM1P11309 404 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 HLA-FP30511 346 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 SSTR4P31391 388 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 OR9A2Q8NGT5 310 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 OR2S2Q9NQN1 319 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 ABCD2Q9UBJ2 740 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 NUFIP1Q9UHK0 495 aaKnown RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 LAMB4A4D0S4 1761 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 ACOT8O14734 319 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 CREBL2O60519 120 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 MRPS14O60783 128 aaKnown RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 RP2O75695 350 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 RGS6P49758 472 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 SEMA3BQ13214 749 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 SNTA1Q13424 505 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 BCL2L15Q5TBC7 163 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 SLC39A5Q6ZMH5 540 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 PARS2Q7L3T8 475 aaKnown RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 FUNDC1Q8IVP5 155 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 ACOT4Q8N9L9 421 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 ISG20Q96AZ6 181 aaKnown RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 METTL2AQ96IZ6 378 aaKnown RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 DPCDQ9BVM2 203 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 PELI2Q9HAT8 420 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 ATXN7L1Q9ULK2 861 aaPredicted RBP13.26□□□□□ -0.29
CPSF1-212ENST00000616140 DNAJC13O75165 2243 aa13.26□□□□□ -0.29
CPSF1-212ENST00000616140 UBFD1O14562 309 aaKnown RBP13.25□□□□□ -0.29
CPSF1-212ENST00000616140 HSPA12AO43301 675 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 LYRM1O43325 122 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 UCHL1P09936 223 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 FAM76BQ5HYJ3 339 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 OR5T2Q8NGG2 359 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 OR2T4Q8NH00 348 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 SLC6A7Q99884 636 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF350Q9GZX5 532 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 GPN2Q9H9Y4 310 aaPredicted RBP13.25□□□□□ -0.29
CPSF1-212ENST00000616140 RP1P56715 2156 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 AGAP5A6NIR3 686 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 CDK1P06493 297 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 GLP1RP43220 463 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 RAB30Q15771 203 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 CNIH2Q6PI25 160 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 LRRN1Q6UXK5 716 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 MFSD6LQ8IWD5 586 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 BADQ92934 168 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 OLAHQ9NV23 265 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 LHX3Q9UBR4 397 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 C19orf25Q9UFG5 118 aaPredicted RBP13.25□□□□□ -0.29
CPSF1-212ENST00000616140 PCDHA9Q9Y5H5 950 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 CACNA1GO43497 2377 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 UBR2Q8IWV8 1755 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 CTXN1P60606 82 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 SPCS2Q15005 226 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 CCDC58Q4VC31 144 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF691Q5VV52 312 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 HTR3DQ70Z44 454 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 OR2T35Q8NGX2 323 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 ZMYND19Q96E35 227 aaPredicted RBP13.25□□□□□ -0.29
CPSF1-212ENST00000616140 CHFRQ96EP1 664 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 DTD2Q96FN9 168 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 C7orf34Q96L11 122 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 ZFYVE21Q9BQ24 234 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 ALG8Q9BVK2 526 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 ZNF717Q9BY31 904 aaPredicted RBP13.25□□□□□ -0.29
CPSF1-212ENST00000616140 CPEB1Q9BZB8 566 aaKnown RBP13.25□□□□□ -0.29
CPSF1-212ENST00000616140 PPIL3Q9H2H8 161 aaKnown RBP13.25□□□□□ -0.29
CPSF1-212ENST00000616140 NUP205Q92621 2012 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 FAM221BA6H8Z2 402 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 FAM171A2A8MVW0 826 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 WASH3PC4AMC7 463 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 PPP1R3DO95685 299 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 HEXBP07686 556 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 RBMXP38159 391 aaKnown RBP13.25□□□□□ -0.29
CPSF1-212ENST00000616140 TMEM164Q5U3C3 297 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 FCRLBQ6BAA4 426 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 OR6C4Q8NGE1 309 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 KCNN1Q92952 543 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 CASD1Q96PB1 797 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 MYNNQ9NPC7 610 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 IL23AQ9NPF7 189 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 THSD1Q9NS62 852 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 PRELID1Q9Y255 219 aa13.25□□□□□ -0.29
CPSF1-212ENST00000616140 CTDSP2O14595 271 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 CDC40O60508 579 aaKnown RBP eCLIP13.24□□□□□ -0.292e-9■■■■□ 25.1
CPSF1-212ENST00000616140 KLKB1P03952 638 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 PVALBP20472 110 aaPredicted RBP13.24□□□□□ -0.29
CPSF1-212ENST00000616140 PDX1P52945 283 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 FGFBP1Q14512 234 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 SGCAQ16586 387 aa13.24□□□□□ -0.29
CPSF1-212ENST00000616140 B3GNT8Q7Z7M8 397 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms