RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PPM1DO15297 605 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 ZNF780AO75290 641 aaPredicted RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 UBXN7O94888 489 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 IGHA2P01877 340 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 GYPBP06028 91 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 F8A1P23610 371 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 SHC1P29353 583 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 GABRA5P31644 462 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 GALK2Q01415 458 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 SLC25A25Q6KCM7 469 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 HTR3DQ70Z44 454 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 TRMT10AQ8TBZ6 339 aaKnown RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 TCEAL4Q96EI5 215 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 NRTNQ99748 197 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 DPH1Q9BZG8 443 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 NANSQ9NR45 359 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 MARK1Q9P0L2 795 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 F5P12259 2224 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 PSME4Q14997 1843 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 FOXE1O00358 373 aaPredicted RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 RFPL3O75679 317 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 ACRP10323 421 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 PIPP12273 146 aaPredicted RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 NDUFV2P19404 249 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 NAA10P41227 235 aaPredicted RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 SRP9P49458 86 aaKnown RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 VSX2P58304 361 aaPredicted RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 TAS2R38P59533 333 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 CHRNEQ04844 493 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 ZNF613Q6PF04 617 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 PARS2Q7L3T8 475 aaKnown RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 LRRTM4Q86VH4 590 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 C1orf216Q8TAB5 229 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 NEURL3Q96EH8 262 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 ALG8Q9BVK2 526 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 CALML5Q9NZT1 146 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 ARID1AO14497 2285 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 ZNF860A6NHJ4 632 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 M0R233 179 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 FFAR1O14842 300 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 HRO43593 1189 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 MT-ND5P03915 603 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 TLX1P31314 330 aaPredicted RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 MC3RP41968 323 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 CRYBA2P53672 197 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 HYAL2Q12891 473 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 TMEM44Q2T9K0 475 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 FRRS1Q6ZNA5 592 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 RANBP3LQ86VV4 465 aaPredicted RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 GPR32P1Q8NGA4 272 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 ZFAND1Q8TCF1 268 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 HMGB4Q8WW32 186 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 TRMT2BQ96GJ1 504 aaKnown RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 PRRC1Q96M27 445 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 ERMAPQ96PL5 475 aaPredicted RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 LYSMD1Q96S90 227 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 NFKBIL1Q9UBC1 381 aaPredicted RBP11.86□□□□□ -0.51
LIG1-221ENST00000613670 TRAPPC4Q9Y296 219 aa11.86□□□□□ -0.51
LIG1-221ENST00000613670 PRAMEF25A6NGN4 478 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 C1QTNF3-AMACRE9PGA6 284 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 SMAD9O15198 467 aaKnown RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 ELOAQ14241 798 aaKnown RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 C3orf38Q5JPI3 329 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 ARTNQ5T4W7 220 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 PRICKLE2Q7Z3G6 844 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 FTMTQ8N4E7 242 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 NATD1Q8N6N6 113 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 TM4SF18Q96CE8 201 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 PLA2G12AQ9BZM1 189 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.85□□□□□ -0.513e-7■□□□□ 10.4
LIG1-221ENST00000613670 NTNG1Q9Y2I2 539 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 SPACA6W5XKT8 324 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 SCN4AP35499 1836 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 MYLKQ15746 1914 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 SLC5A10A0PJK1 596 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 ZC3H12DA2A288 527 aaKnown RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 HMGN4O00479 90 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 NUPL2O15504 423 aaKnown RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 RGS9O75916 674 aaPredicted RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 RPP14O95059 124 aaKnown RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 STAT5AP42229 794 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 PITPNBP48739 271 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 P2RX3P56373 397 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 TLE2Q04725 743 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 LGALS3BPQ08380 585 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 TCEAL8Q8IYN2 117 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 ZNF655Q8N720 491 aaPredicted RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 RPLP0P6Q8NHW5 317 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 CDCP1Q9H5V8 836 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 ZNF69Q9UC07 566 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 PRKAG2Q9UGJ0 569 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 KIAA0100Q14667 2235 aaKnown RBP11.85□□□□□ -0.51
LIG1-221ENST00000613670 A0A087WUU8 490 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 SLC2A10O95528 541 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 H2AFB2P0C5Z0 115 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 SLC6A11P48066 632 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 ARHGEF6Q15052 776 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 MPP7Q5T2T1 576 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 OR4C11Q6IEV9 310 aa11.85□□□□□ -0.51
LIG1-221ENST00000613670 FAM26EQ8N5C1 309 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms