RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 TEKT2Q9UIF3 430 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 YARS2Q9Y2Z4 477 aaKnown RBP13.26□□□□□ -0.29
UPF1-211ENST00000600868 OR10H1Q9Y4A9 318 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 DMXL2Q8TDJ6 3036 aa13.26□□□□□ -0.29
UPF1-211ENST00000600868 DOCK10Q96BY6 2186 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 PRAMEF27A3QJZ7 478 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 TMEM247A6NEH6 219 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 PRORSD1PA6NEY8 169 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 GSC2O15499 205 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 ITGA10O75578 1167 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 DNAJC8O75937 253 aaPredicted RBP13.25□□□□□ -0.29
UPF1-211ENST00000600868 DNAJB5O75953 348 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 OR2J2O76002 312 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 KCNK2O95069 426 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 NADKO95544 446 aaPredicted RBP13.25□□□□□ -0.29
UPF1-211ENST00000600868 GUSBP08236 651 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 TFPTP0C1Z6 253 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 HSD17B1P14061 328 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 NAGAP17050 411 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 SOX11P35716 441 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 GSK3BP49841 420 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 MRPS22P82650 360 aaKnown RBP13.25□□□□□ -0.29
UPF1-211ENST00000600868 FUT5Q11128 374 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 GNA13Q14344 377 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 NNATQ16517 81 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 DECR1Q16698 335 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 MEP1AQ16819 746 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 ZNF630Q2M218 657 aaPredicted RBP13.25□□□□□ -0.29
UPF1-211ENST00000600868 CRB2Q5IJ48 1285 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 ACER2Q5QJU3 275 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 AP1ARQ63HQ0 302 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 ERICH5Q6P6B1 374 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 C16orf47Q6ZP98 133 aaPredicted RBP13.25□□□□□ -0.29
UPF1-211ENST00000600868 ASRGL1Q7L266 308 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 C16orf62Q7Z3J2 963 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 PTOV1Q86YD1 416 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 SIRT6Q8N6T7 355 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 BCORP1Q8N888 145 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 C11orf65Q8NCR3 313 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 OR2T12Q8NG77 320 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 SLC38A5Q8WUX1 472 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 APOBEC4Q8WW27 367 aaKnown RBP13.25□□□□□ -0.29
UPF1-211ENST00000600868 RMND5BQ96G75 393 aaPredicted RBP13.25□□□□□ -0.29
UPF1-211ENST00000600868 RASL10BQ96S79 203 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 ALG2Q9H553 416 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 MRTO4Q9UKD2 239 aaKnown RBP13.25□□□□□ -0.29
UPF1-211ENST00000600868 ZNF451Q9Y4E5 1061 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 NPFFR2Q9Y5X5 522 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 MED13Q9UHV7 2174 aa13.25□□□□□ -0.29
UPF1-211ENST00000600868 MAN1A2O60476 641 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 ZNF354AO60765 605 aaPredicted RBP13.24□□□□□ -0.29
UPF1-211ENST00000600868 CEACAM4O75871 244 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 IL33O95760 270 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 NR2F1P10589 423 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 ABCD3P28288 659 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 PCGF2P35227 344 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 SSR4P51571 173 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 CCL11P51671 97 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 PSMD4P55036 377 aaKnown RBP13.24□□□□□ -0.29
UPF1-211ENST00000600868 MAPK11Q15759 364 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 SYPL1Q16563 259 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.24□□□□□ -0.29
UPF1-211ENST00000600868 VMACQ2NL98 169 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 DCST2Q5T1A1 773 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 AGAP7PQ5VUJ5 663 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 PRAMEF8Q5VWM4 474 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 PRAMEF7Q5VXH5 474 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 B3GNTL1Q67FW5 361 aaPredicted RBP13.24□□□□□ -0.29
UPF1-211ENST00000600868 FCRLBQ6BAA4 426 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 LYPD8Q6UX82 237 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 LRRC74BQ6ZQY2 392 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 IFNEQ86WN2 208 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 SLC30A8Q8IWU4 369 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 ZZZ3Q8IYH5 903 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 MICU2Q8IYU8 434 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 TNIP2Q8NFZ5 429 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 MAL2Q969L2 176 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 TMBIM1Q969X1 311 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 OMA1Q96E52 524 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 AGAP4Q96P64 663 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 SDF2Q99470 211 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 KCTD14Q9BQ13 255 aaPredicted RBP13.24□□□□□ -0.29
UPF1-211ENST00000600868 THTPAQ9BU02 230 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 G6PC3Q9BUM1 346 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 CADM1Q9BY67 442 aaKnown RBP13.24□□□□□ -0.29
UPF1-211ENST00000600868 MMADHCQ9H3L0 296 aaPredicted RBP13.24□□□□□ -0.29
UPF1-211ENST00000600868 PIF1Q9H611 641 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 POLE3Q9NRF9 147 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 GPR83Q9NYM4 423 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 CALML5Q9NZT1 146 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.24□□□□□ -0.29
UPF1-211ENST00000600868 CHD8Q9HCK8 2581 aa13.24□□□□□ -0.29
UPF1-211ENST00000600868 ZFHX4Q86UP3 3567 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 ELOVL7A1L3X0 281 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 OR6C70A6NIJ9 312 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 A6NL46 340 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 SLC28A2O43868 658 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 TSPAN2O60636 221 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 ABCB7O75027 752 aa13.23□□□□□ -0.29
UPF1-211ENST00000600868 STX11O75558 287 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms