RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PCP4L1A6NKN8 68 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 AP2S1P53680 142 aaPredicted RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 ATP12AP54707 1039 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 ARSIQ5FYB1 569 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 C3orf38Q5JPI3 329 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 ARL9Q6T311 187 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 PIAS4Q8N2W9 510 aaPredicted RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 AMER3Q8N944 861 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 SMG7Q92540 1137 aaKnown RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 ARHGAP9Q9BRR9 750 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 SLC46A2Q9BY10 475 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 MYNNQ9NPC7 610 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 SSNA1O43805 119 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 CFDP00746 253 aaPredicted RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 STOMP27105 288 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 CCR2P41597 374 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 TAS2R41P59536 307 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 SUZ12Q15022 739 aaKnown RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 BHLHB9Q6PI77 547 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 LUZP2Q86TE4 346 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 SLC5A11Q8WWX8 675 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 KIAA1143Q96AT1 154 aaPredicted RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 OR2AG1Q9H205 316 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 ZCCHC3Q9NUD5 404 aaKnown RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 TEX10Q9NXF1 929 aaPredicted RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 RASD1Q9Y272 281 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 TEX13CA0A0J9YWL9 993 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 SEC14L5O43304 696 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 LATS1O95835 1130 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 DHFRP00374 187 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 HLA-DPB1P04440 258 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 LAG3P18627 525 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 RECQLP46063 649 aaPredicted RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 GAS1P54826 345 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 EXOSC2Q13868 293 aaKnown RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 LASP1Q14847 261 aaKnown RBP17.24■□□□□ 0.35
UPF1-210ENST00000600689 PIP5KL1Q5T9C9 394 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 GRAMD2AQ8IUY3 354 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 HMGB4Q8WW32 186 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 ZG16BQ96DA0 208 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 C17orf62Q9BQA9 187 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 TAS2R7Q9NYW3 318 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 SCML1Q9UN30 329 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 PLXND1Q9Y4D7 1925 aa17.24■□□□□ 0.35
UPF1-210ENST00000600689 A0A087WUU8 490 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 NEDD8-MDP1E9PL57 170 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 LEFTY2O00292 366 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 PLPP1O14494 284 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 LEFTY1O75610 366 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 FGF18O76093 207 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 C1orf105O95561 183 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 MRPL3P09001 348 aaKnown RBP17.23■□□□□ 0.35
UPF1-210ENST00000600689 EPHA5P54756 1037 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 SLC3A1Q07837 685 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 RGS1Q08116 209 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 PDE7AQ13946 482 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 KCNC3Q14003 757 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 KLHL12Q53G59 568 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 LYPD4Q6UWN0 246 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 LIX1LQ8IVB5 337 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 AP2M1Q96CW1 435 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 TOX2Q96NM4 488 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 SPRTNQ9H040 489 aaPredicted RBP17.23■□□□□ 0.35
UPF1-210ENST00000600689 ZFP64Q9NPA5 681 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 KLHL42Q9P2K6 505 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 CCL16O15467 120 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 LILRB3O75022 631 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 LRG1P02750 347 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 RB1P06400 928 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 PSMB5P28074 263 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 ASTLQ6HA08 431 aaPredicted RBP17.23■□□□□ 0.35
UPF1-210ENST00000600689 GDPD4Q6W3E5 623 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 HTR3DQ70Z44 454 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 SMPDL3AQ92484 453 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 LYSMD1Q96S90 227 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 ABHD1Q96SE0 405 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 MAN2C1Q9NTJ4 1040 aa17.23■□□□□ 0.35
UPF1-210ENST00000600689 SIRT4Q9Y6E7 314 aaPredicted RBP17.23■□□□□ 0.35
UPF1-210ENST00000600689 ARRDC5A6NEK1 342 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 C8AP07357 584 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 FUT1P19526 365 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 AHRP35869 848 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 TRIM23P36406 574 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 TAP2Q03519 686 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 RAB40BQ12829 278 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 GRIN2CQ14957 1233 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 IQCF2Q8IXL9 164 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 GCDHQ92947 438 aaPredicted RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 CXorf40BQ96DE9 158 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 SLC38A2Q96QD8 506 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 TRMT61BQ9BVS5 477 aaKnown RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 RBCK1Q9BYM8 510 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 CLEC4MQ9H2X3 399 aaPredicted RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 KIAA0100Q14667 2235 aaKnown RBP17.22■□□□□ 0.35
UPF1-210ENST00000600689 SCN8AQ9UQD0 1980 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 TRDV1A0A1B0GX56 115 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 POM121CA8CG34 1229 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 STK25O00506 426 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 MT-ND4P03905 459 aa17.22■□□□□ 0.35
UPF1-210ENST00000600689 ACP5P13686 325 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms