RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 AURKCQ9UQB9 309 aa14.15□□□□□ -0.14
TRIM28-209ENST00000597423 WDR45Q9Y484 360 aa14.15□□□□□ -0.14
TRIM28-209ENST00000597423 AP4S1Q9Y587 144 aa14.15□□□□□ -0.14
TRIM28-209ENST00000597423 NUP214P35658 2090 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-209ENST00000597423 GVINP1Q7Z2Y8 2422 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 IGHV1-45A0A0A0MS14 117 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 NSG1A0A0A6YYJ2 146 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 A0A1W2PQ72 361 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 FRG2CA6NGY1 282 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 HNRNPRO43390 633 aaKnown RBP14.14□□□□□ -0.15
TRIM28-209ENST00000597423 H6PDO95479 791 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 LIPCP11150 499 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 FCGR1AP12314 374 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 AQP1P29972 269 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 LCN1P31025 176 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 OTX2P32243 289 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 KRT20P35900 424 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 GPR143P51810 404 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 NRG3P56975 720 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 FOXL2P58012 376 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 SELENOWP63302 87 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 MRPS22P82650 360 aaKnown RBP14.14□□□□□ -0.15
TRIM28-209ENST00000597423 PSG6Q00889 435 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 PUM1Q14671 1186 aaKnown RBP eCLIP14.14□□□□□ -0.15
TRIM28-209ENST00000597423 CYBRD1Q53TN4 286 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 DCST2Q5T1A1 773 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 WDR53Q7Z5U6 358 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-209ENST00000597423 ARMC8Q8IUR7 673 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 PEX5LQ8IYB4 626 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 C8orf44Q96CB5 159 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 OTUB1Q96FW1 271 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-209ENST00000597423 WDR77Q9BQA1 342 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-209ENST00000597423 DOHHQ9BU89 302 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 ITPAQ9BY32 194 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 WWTR1Q9GZV5 400 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 HOXD1Q9GZZ0 328 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 ARMC7Q9H6L4 198 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 GPN2Q9H9Y4 310 aaPredicted RBP14.14□□□□□ -0.15
TRIM28-209ENST00000597423 ASCL3Q9NQ33 180 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 ARMC1Q9NVT9 282 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 SEC14L3Q9UDX4 400 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 SLC13A4Q9UKG4 626 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 IFT52Q9Y366 437 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 HS3ST3B1Q9Y662 390 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 KCNE3Q9Y6H6 103 aa14.14□□□□□ -0.15
TRIM28-209ENST00000597423 TCRBV5S2A0A599 114 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 TRABD2BA6NFA1 517 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 PRKD3O94806 890 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 KCNK2O95069 426 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 ATP6V1G2O95670 118 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 BAG2O95816 211 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 CLPSP04118 112 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 ALPPP05187 535 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 CT45A8P0DMV1 189 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 CT45A9P0DMV2 189 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 RAP2AP10114 183 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 PIGAP37287 484 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 ERFP50548 548 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 RNF4P78317 190 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 LARS2Q15031 903 aaKnown RBP14.13□□□□□ -0.15
TRIM28-209ENST00000597423 ZSWIM7Q19AV6 140 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 BTBD16Q32M84 506 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 GLIPR1L2Q4G1C9 344 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 CT45A2Q5DJT8 189 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 AP1ARQ63HQ0 302 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 PLAG1Q6DJT9 500 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 KIRREL2Q6UWL6 708 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 DTX1Q86Y01 620 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 TAGAPQ8N103 731 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 NUBPLQ8TB37 319 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 CANT1Q8WVQ1 401 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 OIT3Q8WWZ8 545 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 PYDC1Q8WXC3 89 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 PIK3R3Q92569 461 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 PROX1Q92786 737 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 ADIPOR1Q96A54 375 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 RMND5BQ96G75 393 aaPredicted RBP14.13□□□□□ -0.15
TRIM28-209ENST00000597423 TPD52L3Q96J77 140 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 COL21A1Q96P44 957 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 GAL3ST4Q96RP7 486 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 DEFB126Q9BYW3 111 aa14.13□□□□□ -0.15
TRIM28-209ENST00000597423 GPC6Q9Y625 555 aaPredicted RBP14.13□□□□□ -0.15
TRIM28-209ENST00000597423 TRBV11-1A0A0K0K1C0 115 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 LOC101059948A0A1B0GTJ6 334 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 TERTO14746 1132 aaKnown RBP14.12□□□□□ -0.15
TRIM28-209ENST00000597423 TO15178 435 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 HS6ST1O60243 411 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 NME6O75414 186 aaPredicted RBP14.12□□□□□ -0.15
TRIM28-209ENST00000597423 KRT36O76013 467 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 HPP00738 406 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 DBIP07108 87 aaKnown RBP14.12□□□□□ -0.15
TRIM28-209ENST00000597423 CHRM4P08173 479 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 CHRNEQ04844 493 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 FOXC1Q12948 553 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 CAMK2BQ13554 666 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 PCOLCEQ15113 449 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 EBPQ15125 230 aaKnown RBP14.12□□□□□ -0.15
TRIM28-209ENST00000597423 RCN1Q15293 331 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 MAPK11Q15759 364 aa14.12□□□□□ -0.15
TRIM28-209ENST00000597423 TBCELQ5QJ74 424 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms