RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 PPP3R2Q96LZ3 170 aa9.59□□□□□ -0.87
CCDC9-203ENST00000596938 SSU72Q9NP77 194 aaKnown RBP9.59□□□□□ -0.87
CCDC9-203ENST00000596938 ACSS1Q9NUB1 689 aaPredicted RBP9.59□□□□□ -0.87
CCDC9-203ENST00000596938 DDX18Q9NVP1 670 aaKnown RBP9.59□□□□□ -0.87
CCDC9-203ENST00000596938 NTMQ9P121 344 aa9.59□□□□□ -0.87
CCDC9-203ENST00000596938 Q9UFV3 132 aa9.59□□□□□ -0.87
CCDC9-203ENST00000596938 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.59□□□□□ -0.87
CCDC9-203ENST00000596938 BAIAP2L1Q9UHR4 511 aa9.59□□□□□ -0.87
CCDC9-203ENST00000596938 FIS1Q9Y3D6 152 aa9.59□□□□□ -0.87
CCDC9-203ENST00000596938 OR10H1Q9Y4A9 318 aa9.59□□□□□ -0.87
CCDC9-203ENST00000596938 V9GYY5 206 aaPredicted RBP9.59□□□□□ -0.87
CCDC9-203ENST00000596938 CSMD1Q96PZ7 3565 aa9.59□□□□□ -0.87
CCDC9-203ENST00000596938 NCOA6Q14686 2063 aaPredicted RBP9.59□□□□□ -0.87
CCDC9-203ENST00000596938 GTF3C1Q12789 2109 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 CD8B2A6NJW9 211 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 HSPB2A8KAH6 182 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ESPNB1AK53 854 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 TMEM114B3SHH9 223 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 TMEM233B4DJY2 109 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 PIP5K1BO14986 540 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 RGS16O15492 202 aaPredicted RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 PRPS2P11908 318 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 BCKDHAP12694 445 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 DDX5P17844 614 aaKnown RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 MSX1P28360 303 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 CEACAM8P31997 349 aaPredicted RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ARRB2P32121 409 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 GCKP35557 465 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 TIMP3P35625 211 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 MAP3K8P41279 467 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 GAS1P54826 345 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 RPL38P63173 70 aaKnown RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ZNF844Q08AG5 666 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 MLC1Q15049 377 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ZNHIT3Q15649 155 aaPredicted RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 HSPB2Q16082 182 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 DECR1Q16698 335 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 SLC25A35Q3KQZ1 300 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 KRT71Q3SY84 523 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ACSF3Q4G176 576 aaPredicted RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 XKR7Q5GH72 579 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 TNFAIP8L3Q5GJ75 292 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 WIPI1Q5MNZ9 446 aaPredicted RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 NSUN5P2Q63ZY6 315 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 LRIG3Q6UXM1 1119 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 MEX3BQ6ZN04 569 aaKnown RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ZCCHC23Q6ZST2 131 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 SEM1Q6ZVN7 128 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ZNF551Q7Z340 670 aaPredicted RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 R3HCC1LQ7Z5L2 792 aaKnown RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 YRDCQ86U90 279 aaKnown RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 LACC1Q8IV20 430 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 LIX1LQ8IVB5 337 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 NUDCD3Q8IVD9 361 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 CEP70Q8NHQ1 597 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ZPLD1Q8TCW7 415 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 GFM2Q969S9 779 aaKnown RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ZBED6CLQ96FA7 236 aaPredicted RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 TSSK3Q96PN8 268 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 LMF2Q9BU23 707 aaKnown RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 UGT2B28Q9BY64 529 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 OR2B2Q9GZK3 357 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 CALHM2Q9HA72 323 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 SLC24A3Q9HC58 644 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 Q9N2J8 555 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 SERHLQ9NQF3 203 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 NPDC1Q9NQX5 325 aaPredicted RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 SH3BP4Q9P0V3 963 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ATP6V1HQ9UI12 483 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 ZDHHC2Q9UIJ5 367 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 MRTO4Q9UKD2 239 aaKnown RBP9.58□□□□□ -0.88
CCDC9-203ENST00000596938 CBLCQ9ULV8 474 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 MAPRE3Q9UPY8 281 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 SLC6A5Q9Y345 797 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 WIF1Q9Y5W5 379 aa9.58□□□□□ -0.88
CCDC9-203ENST00000596938 NKX2-6A6NCS4 301 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 FAM90A27PA6NNH2 459 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 BIRC5O15392 142 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 PDPK1O15530 556 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 AKAP10O43572 662 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 FADS1O60427 444 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 ZIC3O60481 467 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 PEX11AO75192 247 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 IL33O95760 270 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 CYP4B1P13584 511 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 GRK2P25098 689 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 MAPK1P28482 360 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 SRD5A2P31213 254 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 RPL3P39023 403 aaKnown RBP9.57□□□□□ -0.88
CCDC9-203ENST00000596938 PSMD4P55036 377 aaKnown RBP9.57□□□□□ -0.88
CCDC9-203ENST00000596938 MANFP55145 182 aaKnown RBP9.57□□□□□ -0.88
CCDC9-203ENST00000596938 GFRA1P56159 465 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 ZNF155Q12901 538 aaPredicted RBP9.57□□□□□ -0.88
CCDC9-203ENST00000596938 GALNTL6Q49A17 601 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 VPS26BQ4G0F5 336 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 ATP6AP1LQ52LC2 224 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 ZNF385BQ569K4 471 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 C6orf136Q5SQH8 315 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 ANKRD26P1Q6NSI1 321 aa9.57□□□□□ -0.88
CCDC9-203ENST00000596938 ENPP6Q6UWR7 440 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms