RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 WDYHV1Q96HA8 205 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 METTL2AQ96IZ6 378 aaKnown RBP11.88□□□□□ -0.51
LIG1-212ENST00000596549 CCT7Q99832 543 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 TRMOQ9BU70 441 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 C1orf109Q9NX04 203 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 TAS2R9Q9NYW1 312 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 GIMAP2Q9UG22 337 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 C19orf53Q9UNZ5 99 aaPredicted RBP11.88□□□□□ -0.51
LIG1-212ENST00000596549 CAMK2AQ9UQM7 478 aa11.88□□□□□ -0.51
LIG1-212ENST00000596549 MED12LQ86YW9 2145 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 SLC28A1O00337 649 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 PIP5K1BO14986 540 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 RGS14O43566 566 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 NPHS1O60500 1241 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 SEC22BO75396 215 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 SLITRK5O94991 958 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 EPPINO95925 133 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 LINC00032P0C843 101 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 NEFHP12036 1026 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 CYP4B1P13584 511 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 CEACAM8P31997 349 aaPredicted RBP11.87□□□□□ -0.51
LIG1-212ENST00000596549 ZNF136P52737 540 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 PNLIPRP2P54317 469 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 GFRA1P56159 465 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 HSPB3Q12988 150 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 PDE7AQ13946 482 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 UGT3A2Q3SY77 523 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 ARL13AQ5H913 290 aaPredicted RBP11.87□□□□□ -0.51
LIG1-212ENST00000596549 EMBQ6PCB8 327 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 LARP4Q71RC2 724 aaKnown RBP eCLIP11.87□□□□□ -0.51
LIG1-212ENST00000596549 ZNF551Q7Z340 670 aaPredicted RBP11.87□□□□□ -0.51
LIG1-212ENST00000596549 PLCZ1Q86YW0 608 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 LACC1Q8IV20 430 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 PM20D2Q8IYS1 436 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 CLHC1Q8NHS4 586 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 AGR3Q8TD06 166 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 CIDECQ96AQ7 238 aaPredicted RBP11.87□□□□□ -0.51
LIG1-212ENST00000596549 TMCO6Q96DC7 493 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 ELP4Q96EB1 424 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 TSSK3Q96PN8 268 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 SH3GL2Q99962 352 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 LMF2Q9BU23 707 aaKnown RBP11.87□□□□□ -0.51
LIG1-212ENST00000596549 RTN4RQ9BZR6 473 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 IQCGQ9H095 443 aaKnown RBP11.87□□□□□ -0.51
LIG1-212ENST00000596549 MCCC2Q9HCC0 563 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 DDX18Q9NVP1 670 aaKnown RBP11.87□□□□□ -0.51
LIG1-212ENST00000596549 L3MBTL1Q9Y468 752 aa11.87□□□□□ -0.51
LIG1-212ENST00000596549 MBD3L4A6NDZ8 208 aaPredicted RBP11.86□□□□□ -0.51
LIG1-212ENST00000596549 MBD3L3A6NE82 208 aaPredicted RBP11.86□□□□□ -0.51
LIG1-212ENST00000596549 MBD3L5A6NJ08 208 aaPredicted RBP11.86□□□□□ -0.51
LIG1-212ENST00000596549 AHRRA9YTQ3 701 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 PDPK1O15530 556 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 TYROBPO43914 113 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 CBR3O75828 277 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 IFI6P09912 130 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 GRK2P25098 689 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 SRD5A2P31213 254 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 EVI2BP34910 448 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 FRKP42685 505 aaPredicted RBP11.86□□□□□ -0.51
LIG1-212ENST00000596549 ETV4P43268 484 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 PSPHP78330 225 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 IFFO1Q0D2I5 559 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 SNTB1Q13884 538 aaKnown RBP11.86□□□□□ -0.51
LIG1-212ENST00000596549 EFR3AQ14156 821 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 SLC25A35Q3KQZ1 300 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 XKR7Q5GH72 579 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 SH2D4BQ5SQS7 431 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 CES4AQ5XG92 561 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 NSUN5P2Q63ZY6 315 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 OR5M10Q6IEU7 315 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 PLXDC2Q6UX71 529 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 OR6Y1Q8NGX8 325 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 MBD3L2Q8NHZ7 208 aaPredicted RBP11.86□□□□□ -0.51
LIG1-212ENST00000596549 ABTB1Q969K4 478 aaPredicted RBP11.86□□□□□ -0.51
LIG1-212ENST00000596549 TRIB1Q96RU8 372 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 G6PC3Q9BUM1 346 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 WBP11Q9Y2W2 641 aaKnown RBP11.86□□□□□ -0.51
LIG1-212ENST00000596549 OR10H1Q9Y4A9 318 aa11.86□□□□□ -0.51
LIG1-212ENST00000596549 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 CD8B2A6NJW9 211 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 HSPB2A8KAH6 182 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 FAM47E-STBD1D6RA91 191 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 AKAP10O43572 662 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 SCO2O43819 266 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 TBX19O60806 448 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 SLU7O95391 586 aaKnown RBP11.85□□□□□ -0.51
LIG1-212ENST00000596549 ACTL6AO96019 429 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 IGKV1D-16P01601 117 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 FGF4P08620 206 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 BMP5P22003 454 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 TIMP3P35625 211 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 KRT20P35900 424 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 MAP3K8P41279 467 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 GAB1Q13480 694 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 HSPB2Q16082 182 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 GALNTL6Q49A17 601 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 ADGRE4PQ86SQ3 457 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 IFNEQ86WN2 208 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 DDIASQ8IXT1 998 aa11.85□□□□□ -0.51
LIG1-212ENST00000596549 MREGQ8N565 214 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms