RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 GIMAP5Q96F15 307 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 TMEM41AQ96HV5 264 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 ZNF597Q96LX8 424 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 RILPQ96NA2 401 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 OR52B2Q96RD2 323 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 NODALQ96S42 347 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 DEFB127Q9H1M4 99 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 CXorf36Q9H7Y0 433 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 ZDHHC11Q9H8X9 412 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 QPCTLQ9NXS2 382 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 B4GALT7Q9UBV7 327 aa13.78□□□□□ -0.2
UPF1-202ENST00000594243 A0A1B0GUH1 482 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 NBASA2RRP1 2371 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 POLR3GO15318 223 aaPredicted RBP13.77□□□□□ -0.21
UPF1-202ENST00000594243 CDC40O60508 579 aaKnown RBP eCLIP13.77□□□□□ -0.21
UPF1-202ENST00000594243 ICOSLGO75144 302 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 SLC22A3O75751 556 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 NKX2-2O95096 273 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 HMGN2P05204 90 aaKnown RBP13.77□□□□□ -0.21
UPF1-202ENST00000594243 KRT16P08779 473 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 STSP08842 583 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 ALOX5P09917 674 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 MAP3K8P41279 467 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 MAGEA5P43359 124 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 MASP1P48740 699 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 CASP6P55212 293 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 NME5P56597 212 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 WNT3P56703 355 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 HBA1P69905 142 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 LRRC74AQ0VAA2 488 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 FAM174BQ3ZCQ3 159 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 PDCD4Q53EL6 469 aaKnown RBP13.77□□□□□ -0.21
UPF1-202ENST00000594243 DESI1Q6ICB0 168 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 MFSD12Q6NUT3 480 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 WDR53Q7Z5U6 358 aaPredicted RBP13.77□□□□□ -0.21
UPF1-202ENST00000594243 SPPL2CQ8IUH8 684 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 SFXN5Q8TD22 340 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 EFHD2Q96C19 240 aaPredicted RBP13.77□□□□□ -0.21
UPF1-202ENST00000594243 TCF7L2Q9NQB0 619 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 GIN1Q9NXP7 522 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 KLRF1Q9NZS2 232 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 FAF1Q9UNN5 650 aaPredicted RBP13.77□□□□□ -0.21
UPF1-202ENST00000594243 SLC5A6Q9Y289 635 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 PCDHGB3Q9Y5G1 929 aa13.77□□□□□ -0.21
UPF1-202ENST00000594243 SHANK1Q9Y566 2161 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 CLEC18AA5D8T8 446 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 PRAMEF25A6NGN4 478 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 SLC19A2O60779 497 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 PDE9AO76083 593 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 AGFG2O95081 481 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 IL33O95760 270 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 ABOP16442 354 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 ELAVL4P26378 380 aaKnown RBP13.76□□□□□ -0.21
UPF1-202ENST00000594243 CLK3P49761 638 aaKnown RBP13.76□□□□□ -0.21
UPF1-202ENST00000594243 IDH3AP50213 366 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 AQP5P55064 265 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 TP53BP2Q13625 1128 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 C4orf17Q53FE4 359 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 SPANXN4Q5MJ08 99 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 BICRALQ6AI39 1079 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 ARHGAP11AQ6P4F7 1023 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 CLEC18BQ6UXF7 455 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 CLECL1Q8IZS7 167 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 CLEC18CQ8NCF0 446 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 SLC16A11Q8NCK7 471 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 OR4A15Q8NGL6 344 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 OR1J4Q8NGS1 313 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 PIK3R3Q92569 461 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 NTNG2Q96CW9 530 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 C16orf58Q96GQ5 468 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 TEX37Q96LM6 180 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 STACQ99469 402 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 CCDC28BQ9BUN5 200 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 OSBPL11Q9BXB4 747 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 ACTRT3Q9BYD9 372 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 LDAHQ9H6V9 325 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 PLSCR2Q9NRY7 297 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 FAM120CQ9NX05 1096 aaKnown RBP13.76□□□□□ -0.21
UPF1-202ENST00000594243 ZIM2Q9NZV7 527 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 ZNF835Q9Y2P0 537 aa13.76□□□□□ -0.21
UPF1-202ENST00000594243 TRGV8A0A0C4DH27 118 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 A0A1B0GTH9 108 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 LRRTM2O43300 516 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 SUSD5O60279 629 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 EDF1O60869 148 aaKnown RBP13.75□□□□□ -0.21
UPF1-202ENST00000594243 SCN2BO60939 215 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 CPSF4O95639 269 aaKnown RBP13.75□□□□□ -0.21
UPF1-202ENST00000594243 IGHG3P01860 377 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 IL6P05231 212 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 PGRP06401 933 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 RFPL3SP0C7P2 107 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 ACP2P11117 423 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 CYP4B1P13584 511 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 UQCRC2P22695 453 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 PTGS2P35354 604 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 SOAT1P35610 550 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 PTGDSP41222 190 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 PHC1P78364 1004 aa13.75□□□□□ -0.21
UPF1-202ENST00000594243 IRX1P78414 480 aaPredicted RBP13.75□□□□□ -0.21
UPF1-202ENST00000594243 HSF1Q00613 529 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms