RNA–Protein interactions for RNA: ENST00000580541.1

SKA2-205, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 3 BASIC

Gene SKA2, Length 689 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-205ENST00000580541 TMCO6Q96DC7 493 aa13.2□□□□□ -0.3
SKA2-205ENST00000580541 SGCZQ96LD1 299 aa13.2□□□□□ -0.3
SKA2-205ENST00000580541 TRNT1Q96Q11 434 aaKnown RBP13.2□□□□□ -0.3
SKA2-205ENST00000580541 UTP23Q9BRU9 249 aaKnown RBP13.2□□□□□ -0.3
SKA2-205ENST00000580541 BTBD10Q9BSF8 475 aa13.2□□□□□ -0.3
SKA2-205ENST00000580541 HOXD1Q9GZZ0 328 aa13.2□□□□□ -0.3
SKA2-205ENST00000580541 RNF32Q9H0A6 362 aa13.2□□□□□ -0.3
SKA2-205ENST00000580541 TMEM38AQ9H6F2 299 aa13.2□□□□□ -0.3
SKA2-205ENST00000580541 HPF1Q9NWY4 346 aa13.2□□□□□ -0.3
SKA2-205ENST00000580541 TPRP12270 2363 aaKnown RBP13.2□□□□□ -0.3
SKA2-205ENST00000580541 CNTRLQ7Z7A1 2325 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 OR6C70A6NIJ9 312 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 TMEM200CA6NKL6 621 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 FXYD1O00168 92 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 HMGN4O00479 90 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 PRKNO60260 465 aaPredicted RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 STX11O75558 287 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 DNAJB5O75953 348 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 SFTPCP11686 197 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 ETFAP13804 333 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 ABCD3P28288 659 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 HLCSP50747 726 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 CRISP3P54108 245 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 CORO7P57737 925 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 RPS26P62854 115 aaKnown RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 SLC25A3Q00325 362 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 RHDQ02161 417 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 MFAP5Q13361 173 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 TBR1Q16650 682 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 GPAT3Q53EU6 434 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 SAMD4BQ5PRF9 694 aaKnown RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 COX20Q5RI15 118 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 EXOSC6Q5RKV6 272 aaKnown RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 INTS11Q5TA45 600 aaKnown RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 PRAMEF8Q5VWM4 474 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 PRAMEF7Q5VXH5 474 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 C8orf82Q6P1X6 216 aaPredicted RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 SLC15A3Q8IY34 581 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 DEFB107AQ8IZN7 70 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 C11orf65Q8NCR3 313 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 RBM15BQ8NDT2 890 aaKnown RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 CHDHQ8NE62 594 aaPredicted RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 FDCSPQ8NFU4 85 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 OR5D16Q8NGK9 328 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 OR10A6Q8NH74 314 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 OIT3Q8WWZ8 545 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 TTC9Q92623 222 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 DIO2Q92813 273 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 CDS1Q92903 461 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 RMND5BQ96G75 393 aaPredicted RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 COL21A1Q96P44 957 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 RASL10BQ96S79 203 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 SLC39A3Q9BRY0 314 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 ZNF552Q9H707 407 aaPredicted RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 TRIM45Q9H8W5 580 aaPredicted RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 MTHFD2LQ9H903 347 aaPredicted RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 LIN28AQ9H9Z2 209 aaKnown RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 A4GALTQ9NPC4 353 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 TAS2R1Q9NYW7 299 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 PRPF19Q9UMS4 504 aaKnown RBP13.19□□□□□ -0.3
SKA2-205ENST00000580541 DTX4Q9Y2E6 619 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 IGF2RP11717 2491 aa13.19□□□□□ -0.3
SKA2-205ENST00000580541 PTPRQQ9UMZ3 2332 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 A0A0G2JPF8 293 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 HNRNPCL2B2RXH8 293 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 HNRNPCL3B7ZW38 293 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 MASP2O00187 686 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 SLC28A2O43868 658 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 TNFRSF21O75509 655 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 PPM1BO75688 479 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 KCNK2O95069 426 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 IL33O95760 270 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 FBXO45P0C2W1 286 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 HNRNPCL4P0DMR1 293 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 HPGDP15428 266 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 ENDOUP21128 410 aaKnown RBP13.18□□□□□ -0.3
SKA2-205ENST00000580541 SOX11P35716 441 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 SLC7A2P52569 658 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 MVDP53602 400 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 CASP9P55211 416 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 OC90Q02509 493 aaPredicted RBP13.18□□□□□ -0.3
SKA2-205ENST00000580541 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.18□□□□□ -0.3
SKA2-205ENST00000580541 RABL3Q5HYI8 236 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 DCST2Q5T1A1 773 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 FCRLBQ6BAA4 426 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 HEPHL1Q6MZM0 1159 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 REEP3Q6NUK4 255 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 BNC2Q6ZN30 1099 aaPredicted RBP13.18□□□□□ -0.3
SKA2-205ENST00000580541 LRRC74BQ6ZQY2 392 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 WDR53Q7Z5U6 358 aaPredicted RBP13.18□□□□□ -0.3
SKA2-205ENST00000580541 YTHDF3Q7Z739 585 aaKnown RBP13.18□□□□□ -0.3
SKA2-205ENST00000580541 KRT73Q86Y46 540 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 ZADH2Q8N4Q0 377 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 BCORP1Q8N888 145 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 ZNF527Q8NB42 609 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 OR2T12Q8NG77 320 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 FBXO30Q8TB52 745 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 FAM110BQ8TC76 370 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 PIK3R3Q92569 461 aa13.18□□□□□ -0.3
SKA2-205ENST00000580541 HAS2Q92819 552 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms