RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 FAM153BP0C7A2 387 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 UROSP10746 265 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 BMP5P22003 454 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 DNAJA1P31689 397 aaKnown RBP13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 HTR6P50406 440 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 GAS1P54826 345 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 PSG6Q00889 435 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 FAM153CQ494X1 144 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 GLYR1Q49A26 553 aaPredicted RBP13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 WIPI1Q5MNZ9 446 aaPredicted RBP13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 IFNEQ86WN2 208 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 SIMC1Q8NDZ2 872 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 OR9A2Q8NGT5 310 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 MBD6Q96DN6 1003 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 FCRL1Q96LA6 429 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 IQCGQ9H095 443 aaKnown RBP13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 PIGMQ9H3S5 423 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 FOLH1BQ9HBA9 442 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 MID1IP1Q9NPA3 183 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 MKS1Q9NXB0 559 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 NTMQ9P121 344 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 MRTO4Q9UKD2 239 aaKnown RBP13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 CAMK2AQ9UQM7 478 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 CCL27Q9Y4X3 112 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 PCNX3Q9H6A9 2034 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 KIAA1549Q9HCM3 1950 aa13.18□□□□□ -0.3
SMARCE1-216ENST00000580419 NF1P21359 2839 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 GNB5O14775 395 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 PLIN3O60664 434 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 REM1O75628 298 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 EPXP11678 715 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 NEFHP12036 1026 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 ZNF708P17019 499 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 PSMD4P55036 377 aaKnown RBP13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 DSCR4P56555 118 aaPredicted RBP13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 KIAA0040Q15053 153 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 LARP4Q71RC2 724 aaKnown RBP eCLIP13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 TMEM200AQ86VY9 491 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 FADS6Q8N9I5 356 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 OR7G2Q8NG99 324 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 EXOSC8Q96B26 276 aaKnown RBP13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 BBS4Q96RK4 519 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 ADOQ96SZ5 270 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 GALNT9Q9HCQ5 603 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 SERHLQ9NQF3 203 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 MIEF1Q9NQG6 463 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 SDHAF3Q9NRP4 125 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 DNAJB12Q9NXW2 375 aaKnown RBP13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 TAS2R10Q9NYW0 307 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 CLCF1Q9UBD9 225 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 SLC6A5Q9Y345 797 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 TMED5Q9Y3A6 229 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 TIMM22Q9Y584 194 aa13.17□□□□□ -0.3
SMARCE1-216ENST00000580419 IGLV3-32A0A0A0MS00 114 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 A6NNC1 897 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 GOLGA8RI6L899 631 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 FADS1O60427 444 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 ZIC3O60481 467 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 DDX5P17844 614 aaKnown RBP13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 GRK2P25098 689 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 IL12BP29460 328 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 NTSP30990 170 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 LCN1P31025 176 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 LHX2P50458 406 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 CORO7P57737 925 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 EEFSECP57772 596 aaKnown RBP13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 SLC18A2Q05940 514 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 C2orf80Q0P641 193 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 TOMM20Q15388 145 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 NNATQ16517 81 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 IMPG1Q17R60 797 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 DCST1Q5T197 706 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 LIPMQ5VYY2 423 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 OR2A2Q6IF42 318 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 NOXRED1Q6NXP6 359 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 NPSR1Q6W5P4 371 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 CAMKMTQ7Z624 323 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 YRDCQ86U90 279 aaKnown RBP13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 TRIM42Q8IWZ5 723 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 OR14L1PQ8NHC6 308 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 ELP4Q96EB1 424 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 AMDHD1Q96NU7 426 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 TRIB1Q96RU8 372 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 CCT7Q99832 543 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 LMF2Q9BU23 707 aaKnown RBP13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 C3orf14Q9HBI5 128 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 PFDN4Q9NQP4 134 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 FAM120CQ9NX05 1096 aaKnown RBP13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 CRIM1Q9NZV1 1036 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 SENP1Q9P0U3 644 aa13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 FLNAP21333 2647 aaKnown RBP13.16□□□□□ -0.3
SMARCE1-216ENST00000580419 TUBAL3A6NHL2 446 aa13.15□□□□□ -0.3
SMARCE1-216ENST00000580419 UPK1AO00322 258 aa13.15□□□□□ -0.3
SMARCE1-216ENST00000580419 SLC28A1O00337 649 aa13.15□□□□□ -0.3
SMARCE1-216ENST00000580419 SOX30O94993 753 aa13.15□□□□□ -0.3
SMARCE1-216ENST00000580419 NGFRP08138 427 aa13.15□□□□□ -0.3
SMARCE1-216ENST00000580419 FGF4P08620 206 aa13.15□□□□□ -0.3
SMARCE1-216ENST00000580419 TMIGD3P0DMS9 266 aaPredicted RBP13.15□□□□□ -0.3
SMARCE1-216ENST00000580419 PEPDP12955 493 aa13.15□□□□□ -0.3
SMARCE1-216ENST00000580419 CPA3P15088 417 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms