RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 DSTNP60981 165 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 DCDP81605 110 aaKnown RBP9.47□□□□□ -0.89
SS18-210ENST00000578700 SCARB2Q14108 478 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 GRM7Q14831 915 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 ATP6AP1Q15904 470 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 MPEG1Q2M385 716 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 DEFB110Q30KQ9 67 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 FAM214AQ32MH5 1076 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 CMPK2Q5EBM0 449 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 SAXO2Q658L1 398 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 IGFL3Q6UXB1 125 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 ZNF551Q7Z340 670 aaPredicted RBP9.47□□□□□ -0.89
SS18-210ENST00000578700 C6orf120Q7Z4R8 191 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 PATL1Q86TB9 770 aaKnown RBP9.47□□□□□ -0.89
SS18-210ENST00000578700 RNF130Q86XS8 419 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 PDSS2Q86YH6 399 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 TMEM151BQ8IW70 566 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 ZC3H7AQ8IWR0 971 aaKnown RBP9.47□□□□□ -0.89
SS18-210ENST00000578700 LRRC25Q8N386 305 aaPredicted RBP9.47□□□□□ -0.89
SS18-210ENST00000578700 DNAJC22Q8N4W6 341 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 METTL25Q8N6Q8 603 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 PACRGLQ8N7B6 248 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 AMER3Q8N944 861 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 ANKFN1Q8N957 763 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 PSMA8Q8TAA3 256 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 TANKQ92844 425 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 SMIM10Q96HG1 83 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 SLC35G5Q96KT7 338 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 AMDHD1Q96NU7 426 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 AICDAQ9GZX7 198 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 SEMA6AQ9H2E6 1030 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 GLIPR2Q9H4G4 154 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 ZCCHC3Q9NUD5 404 aaKnown RBP9.47□□□□□ -0.89
SS18-210ENST00000578700 DHCR7Q9UBM7 475 aaKnown RBP9.47□□□□□ -0.89
SS18-210ENST00000578700 METRNQ9UJH8 293 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 DAPP1Q9UN19 280 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 LRCH1Q9Y2L9 728 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 MYO7BQ6PIF6 2116 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 MTORP42345 2549 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 PKDREJQ9NTG1 2253 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 PCSK5Q92824 1860 aa9.47□□□□□ -0.89
SS18-210ENST00000578700 MED13LQ71F56 2210 aa9.46□□□□□ -0.89
SS18-210ENST00000578700 C4orf51C9J302 202 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 CLDN4O14493 209 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 PGRMC2O15173 223 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 CLOCKO15516 846 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 EMC8O43402 210 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 OR2B3O76000 313 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 PRKD3O94806 890 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 SLITRK5O94991 958 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 AGR2O95994 175 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 CST1P01037 141 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 RNH1P13489 461 aaKnown RBP9.46□□□□□ -0.9
SS18-210ENST00000578700 ALAS2P22557 587 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 FEN1P39748 380 aaKnown RBP9.46□□□□□ -0.9
SS18-210ENST00000578700 XKP51811 444 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 EMP3P54852 163 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 RAB38P57729 211 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 CDK6Q00534 326 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 C18orf63Q68DL7 685 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 ZBTB49Q6ZSB9 765 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 CCDC116Q8IYX3 515 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 LILRA2Q8N149 483 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 CLEC4FQ8N1N0 589 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 C7orf57Q8NEG2 295 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 VPS50Q96JG6 964 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 BTBD9Q96Q07 612 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 ZNF607Q96SK3 696 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 WDR77Q9BQA1 342 aaPredicted RBP9.46□□□□□ -0.9
SS18-210ENST00000578700 SPATA5L1Q9BVQ7 753 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 TRIM45Q9H8W5 580 aaPredicted RBP9.46□□□□□ -0.9
SS18-210ENST00000578700 CACYBPQ9HB71 228 aaKnown RBP9.46□□□□□ -0.9
SS18-210ENST00000578700 FAM60AQ9NP50 221 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 A4GALTQ9NPC4 353 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 TRPC4Q9UBN4 977 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 DNAJB9Q9UBS3 223 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 CES1P1Q9UKY3 287 aa9.46□□□□□ -0.9
SS18-210ENST00000578700 NIPBLQ6KC79 2804 aaeCLIP9.46□□□□□ -0.9
SS18-210ENST00000578700 MAP1AP78559 2803 aaPredicted RBP9.45□□□□□ -0.9
SS18-210ENST00000578700 A0A1B0GUH1 482 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 HYKKA2RU49 373 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 ZNF860A6NHJ4 632 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 CNOT3O75175 753 aaKnown RBP9.45□□□□□ -0.9
SS18-210ENST00000578700 E2F6O75461 281 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 TNFRSF21O75509 655 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 CTSBP07858 339 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 C8orf89P0DMQ9 161 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 EDN3P14138 238 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 PORP16435 677 aaPredicted RBP9.45□□□□□ -0.9
SS18-210ENST00000578700 ZNF23P17027 643 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 ITGA2P17301 1181 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 CDK9P50750 372 aaKnown RBP9.45□□□□□ -0.9
SS18-210ENST00000578700 PRKAG1P54619 331 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 AIMP2Q13155 320 aaKnown RBP9.45□□□□□ -0.9
SS18-210ENST00000578700 MED21Q13503 144 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 RUNX2Q13950 521 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 FAM53BQ14153 422 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 ADRM1Q16186 407 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 PRSS53Q2L4Q9 553 aa9.45□□□□□ -0.9
SS18-210ENST00000578700 ATAD3BQ5T9A4 648 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms