RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CDRT4Q8N9R6 151 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 Q8NA96 180 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 CHDHQ8NE62 594 aaPredicted RBP8.55□□□□□ -1.04
VPS35-211ENST00000569950 CATSPER1Q8NEC5 780 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 VPS37AQ8NEZ2 397 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 OR52N2Q8NGI0 321 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 HAS2Q92819 552 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 CDS1Q92903 461 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 RAB8BQ92930 207 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 LRRC58Q96CX6 371 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 SPACA9Q96E40 222 aaPredicted RBP8.55□□□□□ -1.04
VPS35-211ENST00000569950 HSPBAP1Q96EW2 488 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 SLC35G5Q96KT7 338 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 ZNF354BQ96LW1 612 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 AGAP4Q96P64 663 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 STACQ99469 402 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 HES7Q9BYE0 225 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 OR51I1Q9H343 314 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 PIGUQ9H490 435 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 RUBCNLQ9H714 662 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 RMND5AQ9H871 391 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 C3orf14Q9HBI5 128 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 DUSP22Q9NRW4 184 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 DEPPQ9NTK1 212 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 MRGBPQ9NV56 204 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.55□□□□□ -1.04
VPS35-211ENST00000569950 CMTM6Q9NX76 183 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 ANKRD10Q9NXR5 420 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 STMN3Q9NZ72 180 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 PRODH2Q9UF12 536 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 TUBD1Q9UJT1 453 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 USP22Q9UPT9 525 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 NPFFR2Q9Y5X5 522 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 FLNCQ14315 2725 aa8.55□□□□□ -1.04
VPS35-211ENST00000569950 DNAJC13O75165 2243 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 RP1L1Q8IWN7 2480 aaPredicted RBP8.54□□□□□ -1.04
VPS35-211ENST00000569950 OR5H15A6NDH6 313 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 A8MVJ9 347 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 CLIC1O00299 241 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 ANGPT2O15123 496 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 ACOX3O15254 700 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 ASNA1O43681 348 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 DYRK3O43781 588 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 FADS1O60427 444 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 FCMRO60667 390 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 UGT2B11O75310 529 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 PPM1BO75688 479 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 UBOX5O94941 541 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 KCNK2O95069 426 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 KCNH1O95259 989 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 IL33O95760 270 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 TFPTP0C1Z6 253 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 OR12D1P0DN82 309 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 CCL3P10147 92 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 CYP4B1P13584 511 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 ETFAP13804 333 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 NAGAP17050 411 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 MATN1P21941 496 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 GABRA3P34903 492 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 TNFSF10P50591 281 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 SSR4P51571 173 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 CRYBA2P53672 197 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 GAS1P54826 345 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 FBXW4P57775 412 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 MTPNP58546 118 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 DCAF7P61962 342 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 AP2B1P63010 937 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 MRPS22P82650 360 aaKnown RBP8.54□□□□□ -1.04
VPS35-211ENST00000569950 NFYCQ13952 458 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 LY6DQ14210 128 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 MAPRE2Q15555 327 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 SPDYE7PQ495Y7 208 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 CYP27C1Q4G0S4 372 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 CCNJQ5T5M9 372 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 C6orf163Q5TEZ5 329 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 FNDC7Q5VTL7 733 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 BICRALQ6AI39 1079 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 TNFAIP8L2Q6P589 184 aaPredicted RBP8.54□□□□□ -1.04
VPS35-211ENST00000569950 APOOLQ6UXV4 268 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 Q6ZS92 163 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 TRPM8Q7Z2W7 1104 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 NET1Q7Z628 596 aaPredicted RBP8.54□□□□□ -1.04
VPS35-211ENST00000569950 GALNT10Q86SR1 603 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 SLC15A3Q8IY34 581 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 SLC34A3Q8N130 599 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 SLC15A4Q8N697 577 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 ANKFN1Q8N957 763 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 OR10G3Q8NGC4 313 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 OR5L2Q8NGL0 311 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 SLC9A6Q92581 669 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 TMBIM1Q969X1 311 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 TMEM125Q96AQ2 219 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 ZG16BQ96DA0 208 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 OMA1Q96E52 524 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 SCMH1Q96GD3 660 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 ZNF583Q96ND8 569 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 NODALQ96S42 347 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 SDF2Q99470 211 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 KLHDC3Q9BQ90 382 aa8.54□□□□□ -1.04
VPS35-211ENST00000569950 SAP130Q9H0E3 1048 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms