RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 A4GNTQ9UNA3 340 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 GZMKP49863 264 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 ANXA11P50995 505 aaKnown RBP13.63□□□□□ -0.23
VPS35-210ENST00000568784 ZNF81P51508 661 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.63□□□□□ -0.23
VPS35-210ENST00000568784 C12orf73Q69YU5 71 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 SYT9Q86SS6 491 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 CPXM2Q8N436 756 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 TMEM163Q8TC26 289 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 CLEC4MQ9H2X3 399 aaPredicted RBP13.63□□□□□ -0.23
VPS35-210ENST00000568784 EXOSC1Q9Y3B2 195 aaKnown RBP13.63□□□□□ -0.23
VPS35-210ENST00000568784 HCFC2Q9Y5Z7 792 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 KCNE3Q9Y6H6 103 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 A0A1W2PS29 197 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 ACADMP11310 421 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 BMP7P18075 431 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 FUT1P19526 365 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 SHC1P29353 583 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 TRIM23P36406 574 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 MLLT3P42568 568 aaPredicted RBP13.63□□□□□ -0.23
VPS35-210ENST00000568784 RPA4Q13156 261 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 DSG2Q14126 1118 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 POU4F3Q15319 338 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 GLYR1Q49A26 553 aaPredicted RBP13.63□□□□□ -0.23
VPS35-210ENST00000568784 NKAIN4Q8IVV8 208 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 ANKRD53Q8N9V6 530 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 A0A1W2PRG6 482 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 PGRMC2O15173 223 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 RECKO95980 971 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 GYPBP06028 91 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 CPEP16870 476 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 SLC9A5Q14940 896 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 NTRK2Q16620 822 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 ADIPOR2Q86V24 386 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 TMC8Q8IU68 726 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 FAM26EQ8N5C1 309 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 TBC1D19Q8N5T2 526 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 OR51L1Q8NGJ5 315 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 RFT1Q96AA3 541 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 SLC35C2Q9NQQ7 365 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 SCN2AQ99250 2005 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 PRR23D1E9PI22 279 aaPredicted RBP13.62□□□□□ -0.23
VPS35-210ENST00000568784 PIP5K1CO60331 668 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 UBXN7O94888 489 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 PRR23D2P0DMB1 279 aaPredicted RBP13.62□□□□□ -0.23
VPS35-210ENST00000568784 ELK1P19419 428 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 MC3RP41968 323 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 RRAS2P62070 204 aaPredicted RBP13.62□□□□□ -0.23
VPS35-210ENST00000568784 TEKQ02763 1124 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 YIF1BQ5BJH7 314 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 BICRALQ6AI39 1079 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 MTSS1LQ765P7 747 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 RDH10Q8IZV5 341 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 RAB42Q8N4Z0 105 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 ZCCHC10Q8TBK6 192 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 CLIP3Q96DZ5 547 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 SLC28A3Q9HAS3 691 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 RASD1Q9Y272 281 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 NPIPB8E9PQR5 432 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 CHST10O43529 356 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 CHRM4P08173 479 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 GSTM3P21266 225 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 PCDH1Q08174 1060 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 RAB40BQ12829 278 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 SUZ12Q15022 739 aaKnown RBP13.62□□□□□ -0.23
VPS35-210ENST00000568784 DCUN1D3Q8IWE4 304 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 SLC39A11Q8N1S5 342 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 ZNF433Q8N7K0 673 aaPredicted RBP13.62□□□□□ -0.23
VPS35-210ENST00000568784 OR51A7Q8NH64 312 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 MSANTD3Q96H12 275 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 GON7Q9BXV9 100 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 ARID1AO14497 2285 aa13.62□□□□□ -0.23
VPS35-210ENST00000568784 TBC1D3BA6NDS4 549 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 HCN1O60741 890 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 B4GALT2O60909 372 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 GABRA5P31644 462 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 LIMS1P48059 325 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 ATP12AP54707 1039 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 P2RX3P56373 397 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 PDE7AQ13946 482 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 NDUFA9Q16795 377 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 OR52L1Q8NGH7 329 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 OR8D4Q8NGM9 314 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 IFT27Q9BW83 186 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 ADAP2Q9NPF8 381 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 AP1M2Q9Y6Q5 423 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 OR5F1O95221 314 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 LIMS3P0CW19 117 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 LIMS4P0CW20 117 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 ST3GAL3Q11203 375 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 ELOAQ14241 798 aaKnown RBP13.61□□□□□ -0.23
VPS35-210ENST00000568784 TRAM2Q15035 370 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 OCLNQ16625 522 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 TCEAL5Q5H9L2 206 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 CCDC149Q6ZUS6 474 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 ESPNLQ6ZVH7 1005 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 CEACAM19Q7Z692 300 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 ZFAND1Q8TCF1 268 aa13.61□□□□□ -0.23
VPS35-210ENST00000568784 THAP7Q9BT49 309 aaPredicted RBP13.61□□□□□ -0.23
VPS35-210ENST00000568784 DPH1Q9BZG8 443 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms