RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 PRR23AA6NEV1 266 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 FAM25AB3EWG3 89 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 FAM25CB3EWG5 89 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 FAM25GB3EWG6 89 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 B4DXG7 233 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 MAN2B1O00754 1011 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 SLC28A2O43868 658 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 PCDH8O95206 1070 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 CLEC2LP0C7M8 214 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 MYL9P24844 172 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 ACADLP28330 430 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 SDC2P34741 201 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 FRKP42685 505 aaPredicted RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 GNG2P59768 71 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 EFNB1P98172 346 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 CDK5Q00535 292 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 HSPB3Q12988 150 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 TPBGQ13641 420 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 NOXA1Q86UR1 476 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF687Q8N1G0 1237 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 TBC1D19Q8N5T2 526 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 ZFPM2Q8WW38 1151 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 NUS1Q96E22 293 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 ZBED6CLQ96FA7 236 aaPredicted RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 RNF170Q96K19 258 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF514Q96K75 400 aaPredicted RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 MRGPRX1Q96LB2 322 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 QRFPRQ96P65 431 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 WFDC6Q9BQY6 131 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 TTYH2Q9BSA4 534 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF717Q9BY31 904 aaPredicted RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 RNF121Q9H920 327 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 ANKRA2Q9H9E1 313 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 SIRT3Q9NTG7 399 aaPredicted RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 C2orf42Q9NWW7 574 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 MMP17Q9ULZ9 603 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 TMEM129A0AVI4 362 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 IGLON5A6NGN9 336 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 OR5K4A6NMS3 321 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 SLC30A4O14863 429 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 SULT1B1O43704 296 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 B4GALT2O60909 372 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 SOD1P00441 154 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 NDUFV2P19404 249 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 MMP11P24347 488 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 PKLRP30613 574 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 BSGP35613 385 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 CCT3P49368 545 aaKnown RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 RACK1P63244 317 aaKnown RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 RAB40BQ12829 278 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 PYDC2Q56P42 97 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 EOGTQ5NDL2 527 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 ZER1Q7Z7L7 766 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 OR4K5Q8NGD3 323 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 RAD51AP1Q96B01 352 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 C1GALT1C1Q96EU7 318 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 SIPA1Q96FS4 1042 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 LINC00615Q96LM1 132 aaPredicted RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 ABCG4Q9H172 646 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 FGF20Q9NP95 211 aaPredicted RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 P2RX2Q9UBL9 471 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 NUFIP1Q9UHK0 495 aaKnown RBP12.44□□□□□ -0.42
VPS4A-204ENST00000566354 GSTK1Q9Y2Q3 226 aa12.44□□□□□ -0.42
VPS4A-204ENST00000566354 TCRBV21S2A2A0A5A6 115 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 TBX6O95947 436 aaPredicted RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 GSTM3P21266 225 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 HLA-DMAP28067 261 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 SMSP52788 366 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 FLYWCH1Q4VC44 716 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF628Q5EBL2 1059 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 TMEM31Q5JXX7 168 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ENTPD8Q5MY95 495 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 FCRLBQ6BAA4 426 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ACSM5Q6NUN0 579 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 C1orf94Q6P1W5 598 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF730Q6ZMV8 503 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 OR14C36Q8NHC7 312 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 FGF11Q92914 225 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ZNF764Q96H86 408 aaPredicted RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 IER2Q9BTL4 223 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 KATNB1Q9BVA0 655 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 MS4A8Q9BY19 250 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 FOXQ1Q9C009 403 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ZDHHC5Q9C0B5 715 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 FBRSQ9HAH7 460 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 LMAN1LQ9HAT1 526 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 RANGRFQ9HD47 186 aaPredicted RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ACSS1Q9NUB1 689 aaPredicted RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 FBXL21Q9UKT6 434 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 SLC9A8Q9Y2E8 581 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 RTCAO00442 366 aaKnown RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 PLA2G10O15496 165 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 POP7O75817 140 aaKnown RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 ACP2P11117 423 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 CPN2P22792 545 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 KELP23276 732 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 FGF9P31371 208 aaPredicted RBP12.43□□□□□ -0.42
VPS4A-204ENST00000566354 GPC1P35052 558 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 GAS6Q14393 721 aa12.43□□□□□ -0.42
VPS4A-204ENST00000566354 UBXN2BQ14CS0 331 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms