RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 FAM214AQ32MH5 1076 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 ENTPD8Q5MY95 495 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 FRRS1Q6ZNA5 592 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 FAM92BQ6ZTR7 304 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 NT5CQ8TCD5 201 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 PRRC1Q96M27 445 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 SERINC2Q96SA4 455 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 MGLLQ99685 303 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 PSD2Q9BQI7 771 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 BTBD2Q9BX70 525 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 SLIRPQ9GZT3 109 aaKnown RBP9.93□□□□□ -0.82
CUX1-217ENST00000558836 C8orf33Q9H7E9 229 aaPredicted RBP9.93□□□□□ -0.82
CUX1-217ENST00000558836 WDR45Q9Y484 360 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 SLC22A7Q9Y694 548 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 PCDH15Q96QU1 1955 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 ARRDC5A6NEK1 342 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 PRAMEF26H0Y7S4 382 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 PEX12O00623 359 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 LRRTM2O43300 516 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 PIP5K1CO60331 668 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 RDH16O75452 317 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 THY1P04216 161 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 CT62P0C5K7 136 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 CCNYL3P0C7X3 344 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 SMIM10L1P0DMW3 83 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 PRG2P13727 222 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 FUT1P19526 365 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 TLX1P31314 330 aaPredicted RBP9.93□□□□□ -0.82
CUX1-217ENST00000558836 TSFMP43897 325 aaKnown RBP9.93□□□□□ -0.82
CUX1-217ENST00000558836 GPR4P46093 362 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 GIPRP48546 466 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 MAZP56270 477 aaKnown RBP9.93□□□□□ -0.82
CUX1-217ENST00000558836 RGS8P57771 180 aaPredicted RBP9.93□□□□□ -0.82
CUX1-217ENST00000558836 YPEL5P62699 121 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 IFITM3Q01628 133 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 CEBPEQ15744 281 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 SNAPC1Q16533 368 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 MAPK14Q16539 360 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 SLX4IPQ5VYV7 408 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 PLAG1Q6DJT9 500 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 ZNF730Q6ZMV8 503 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 DGAT2L6Q6ZPD8 337 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 SLC46A3Q7Z3Q1 461 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 CSNK1A1LQ8N752 337 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 AVL9Q8NBF6 648 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 CAMKVQ8NCB2 501 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 OR9A4Q8NGU2 314 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 SMIM10Q96HG1 83 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 LRR1Q96L50 414 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 NECTIN4Q96NY8 510 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 CCDC3Q9BQI4 270 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 TSSK6Q9BXA6 273 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 PINK1Q9BXM7 581 aa9.93□□□□□ -0.82
CUX1-217ENST00000558836 UNC13CQ8NB66 2214 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 SPTY2D1-AS1A0A0U1RR47 76 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 FAM170BA6NMN3 283 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 C2orf74A8MZ97 194 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 CLDN25C9JDP6 229 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 TNFSF14O43557 240 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 PRKNO60260 465 aaPredicted RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 OXSR1O95747 527 aaPredicted RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 ACP2P11117 423 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 RABIFP47224 123 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 ANXA11P50995 505 aaKnown RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 INAQ16352 499 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 ABHD13Q7L211 337 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 RRM2BQ7LG56 351 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 ABI3BPQ7Z7G0 1075 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 GALNT12Q8IXK2 581 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 METTL27Q8N6F8 245 aaPredicted RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 OR8D4Q8NGM9 314 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 BAHD1Q8TBE0 780 aaPredicted RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 GPBAR1Q8TDU6 330 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 TMEM255BQ8WV15 326 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 TRUB1Q8WWH5 349 aaKnown RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 TRNT1Q96Q11 434 aaKnown RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 POLE4Q9NR33 117 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 ENOPH1Q9UHY7 261 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 CA14Q9ULX7 337 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 PORP16435 677 aaPredicted RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 SMIM11AP58511 58 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 ZNF91Q05481 1191 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 GNA13Q14344 377 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 GAS6Q14393 721 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 TYW3Q6IPR3 259 aaKnown RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 TDHQ8IZJ6 230 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 CENPSQ8N2Z9 138 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 MCFD2Q8NI22 146 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 MS4A4EQ96PG1 132 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 MCHR1Q99705 422 aa9.92□□□□□ -0.82
CUX1-217ENST00000558836 EXOSC4Q9NPD3 245 aaKnown RBP9.92□□□□□ -0.82
CUX1-217ENST00000558836 EFCAB10A6NFE3 127 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 KPNA4O00629 521 aaPredicted RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 ARHGAP33O14559 1287 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 UBE2IP63279 158 aaKnown RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 MAT1AQ00266 395 aaKnown RBP9.91□□□□□ -0.82
CUX1-217ENST00000558836 IRF3Q14653 427 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 C12orf73Q69YU5 71 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 SLC30A6Q6NXT4 461 aa9.91□□□□□ -0.82
CUX1-217ENST00000558836 C1orf94Q6P1W5 598 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms