RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SNRPGP62308 76 aaKnown RBP10.66□□□□□ -0.7
LDLR-208ENST00000558518 DGCR2P98153 550 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 RGS1Q08116 209 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 ARHGEF6Q15052 776 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 GDPD4Q6W3E5 623 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 CHCHD4Q8N4Q1 142 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 LSMEM1Q8N8F7 131 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 OR8D4Q8NGM9 314 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 TRMT10AQ8TBZ6 339 aaKnown RBP10.66□□□□□ -0.7
LDLR-208ENST00000558518 GIMAP1Q8WWP7 306 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 TMEM169Q96HH4 297 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 MSLNLQ96KJ4 702 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 SAMD8Q96LT4 415 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 COQ10AQ96MF6 247 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 GTPBP2Q9BX10 602 aaKnown RBP10.66□□□□□ -0.7
LDLR-208ENST00000558518 DPAGT1Q9H3H5 408 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 SPG21Q9NZD8 308 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 PRG2P13727 222 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 CTGFP29279 349 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 GABRA5P31644 462 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 ACSL1P33121 698 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 METAP1P53582 386 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 CLDN12P56749 244 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 KIAA1024LP59773 190 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 CDKN3Q16667 212 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 SLC25A35Q3KQZ1 300 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 ZNF311Q5JNZ3 666 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 ZNF697Q5TEC3 545 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 ZNF770Q6IQ21 691 aaPredicted RBP10.66□□□□□ -0.7
LDLR-208ENST00000558518 TMEM107Q6UX40 140 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 QSOX2Q6ZRP7 698 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 KIF18BQ86Y91 864 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 LSM14AQ8ND56 463 aaKnown RBP10.66□□□□□ -0.7
LDLR-208ENST00000558518 TMEM163Q8TC26 289 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 SMPDL3AQ92484 453 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 ZNF354BQ96LW1 612 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 ABHD1Q96SE0 405 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 MRPL9Q9BYD2 267 aaKnown RBP10.66□□□□□ -0.7
LDLR-208ENST00000558518 RNF32Q9H0A6 362 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 RWDD3Q9Y3V2 267 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 CDH10Q9Y6N8 788 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 PLXND1Q9Y4D7 1925 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 A0A087WUU8 490 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 HMGN4O00479 90 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 PRODHO43272 600 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 POP4O95707 220 aaKnown RBP10.66□□□□□ -0.7
LDLR-208ENST00000558518 ACP2P11117 423 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 DSG2Q14126 1118 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 KRT33BQ14525 404 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 ANGPT1Q15389 498 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 NKAIN4Q8IVV8 208 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 SIAH3Q8IW03 269 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 DDOQ99489 341 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 PPP1R3EQ9H7J1 279 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 MRPL17Q9NRX2 175 aaKnown RBP10.66□□□□□ -0.7
LDLR-208ENST00000558518 UBQLN2Q9UHD9 624 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 KCNE3Q9Y6H6 103 aa10.66□□□□□ -0.7
LDLR-208ENST00000558518 H0YC42 278 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 PQBP1O60828 265 aaKnown RBP10.65□□□□□ -0.7
LDLR-208ENST00000558518 SOCS5O75159 536 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 SLC43A1O75387 559 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 ZNF821O75541 412 aaPredicted RBP10.65□□□□□ -0.7
LDLR-208ENST00000558518 ARHGEF15O94989 841 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 SOD1P00441 154 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 MPC1LP0DKB6 136 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 ACP5P13686 325 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 ITGB7P26010 798 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 PYCR1P32322 319 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 GPR1P46091 355 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 FNTBP49356 437 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 UBE2MP61081 183 aaKnown RBP10.65□□□□□ -0.7
LDLR-208ENST00000558518 PRAMEF14Q5SWL7 426 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 PRAMEF13Q5VWM6 474 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 FAM71E1Q6IPT2 247 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 C19orf48Q6RUI8 117 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 OR51A7Q8NH64 312 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 GDF15Q99988 308 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 TEX12Q9BXU0 123 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 TMEM38AQ9H6F2 299 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 STARD7Q9NQZ5 370 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 P2RX2Q9UBL9 471 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 AK6Q9Y3D8 172 aaKnown RBP10.65□□□□□ -0.7
LDLR-208ENST00000558518 OR51B4Q9Y5P0 310 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 PROM1O43490 865 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 CLTBP09497 229 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 UCHL1P09936 223 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 PIPP12273 146 aaPredicted RBP10.65□□□□□ -0.7
LDLR-208ENST00000558518 TBXA2RP21731 343 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 MAPK8P45983 427 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 GCGRP47871 477 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 MAZP56270 477 aaKnown RBP10.65□□□□□ -0.7
LDLR-208ENST00000558518 POLR2LP62875 67 aaKnown RBP10.65□□□□□ -0.7
LDLR-208ENST00000558518 CRHR2Q13324 411 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 ODF4Q2M2E3 257 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 CDC73Q6P1J9 531 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 TMEM91Q6ZNR0 172 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 OR8K5Q8NH50 307 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 DNAJA3Q96EY1 480 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 ALG14Q96F25 216 aa10.65□□□□□ -0.7
LDLR-208ENST00000558518 ELMOD3Q96FG2 381 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms