RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 KCNH1O95259 989 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 CBX6O95503 412 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 HMGN2P05204 90 aaKnown RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 IL6P05231 212 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 PGRP06401 933 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 VIMP08670 466 aaKnown RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 KRT16P08779 473 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 ALOX5P09917 674 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 TROVE2P10155 538 aaKnown RBP eCLIP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 ACP2P11117 423 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 MDH1P40925 334 aaKnown RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 CASP3P42574 277 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 UQCRFS1P47985 274 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 PNLIPRP2P54317 469 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 PPIAP62937 165 aaKnown RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 LRRC74AQ0VAA2 488 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 FOXO1Q12778 655 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 MRPL49Q13405 166 aaKnown RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 LASP1Q14847 261 aaKnown RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 KRTCAP3Q53RY4 240 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 BICRALQ6AI39 1079 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 DESI1Q6ICB0 168 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 PAOXQ6QHF9 649 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 SLC22A16Q86VW1 577 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 SIAH3Q8IW03 269 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 RFWD2Q8NHY2 731 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 JADE3Q92613 823 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 HOXB13Q92826 284 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 EFHD2Q96C19 240 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 CHMP6Q96FZ7 201 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 C16orf58Q96GQ5 468 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 GPR137Q96N19 417 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 RILPQ96NA2 401 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 CCDC115Q96NT0 180 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 OR52E6Q96RD3 313 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 ANGPTL4Q9BY76 406 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 TTTY12Q9BZ98 90 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 CCDC134Q9H6E4 229 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 IL1RL2Q9HB29 575 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 PROK2Q9HC23 129 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 FGFR1OP2Q9NVK5 253 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 SEC14L3Q9UDX4 400 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 BTNL2Q9UIR0 455 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 BOKQ9UMX3 212 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 NPIPA1Q9UND3 350 aa12.47□□□□□ -0.41
SHMT2-228ENST00000557302 FAF1Q9UNN5 650 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-228ENST00000557302 RNF103-CHMP3A0A140T963 221 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 GXYLT2A0PJZ3 443 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 FAM234BA2RU67 622 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 PRAMEF25A6NGN4 478 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 FAM166BA8MTA8 275 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 HS6ST1O60243 411 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 GLSO94925 669 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-228ENST00000557302 UNC5CO95185 931 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 SNX4O95219 450 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 IL33O95760 270 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 MAP3K8P41279 467 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 RFX3P48380 749 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 MASP1P48740 699 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 MRPL19P49406 292 aaKnown RBP12.46□□□□□ -0.41
SHMT2-228ENST00000557302 POLR2JP52435 117 aaKnown RBP12.46□□□□□ -0.41
SHMT2-228ENST00000557302 PSMD4P55036 377 aaKnown RBP12.46□□□□□ -0.41
SHMT2-228ENST00000557302 IRX1P78414 480 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-228ENST00000557302 DUSP5Q16690 384 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 TMEM81Q6P7N7 255 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 GFRALQ6UXV0 394 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 BNC2Q6ZN30 1099 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-228ENST00000557302 PACS2Q86VP3 889 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 COX18Q8N8Q8 333 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 SLC16A11Q8NCK7 471 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 OR9I1Q8NGQ6 314 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 OR5AK3PQ8NH89 298 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 PIK3R3Q92569 461 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 RMND5BQ96G75 393 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-228ENST00000557302 ZNF597Q96LX8 424 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 JSRP1Q96MG2 331 aaPredicted RBP12.46□□□□□ -0.41
SHMT2-228ENST00000557302 NODALQ96S42 347 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 STACQ99469 402 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 YIPF4Q9BSR8 244 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 OSBPL11Q9BXB4 747 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 ACTRT3Q9BYD9 372 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 ZFP64Q9NPA5 681 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 GPATCH2Q9NW75 528 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 KLRF1Q9NZS2 232 aa12.46□□□□□ -0.41
SHMT2-228ENST00000557302 POLEQ07864 2286 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 ASNA1O43681 348 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 TRIM3O75382 744 aaPredicted RBP12.45□□□□□ -0.42
SHMT2-228ENST00000557302 SOX30O94993 753 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 CYP4B1P13584 511 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 UQCRC2P22695 453 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 ATP4BP51164 291 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 KCNC4Q03721 635 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 SNTA1Q13424 505 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 HYAL4Q2M3T9 481 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 TIGD2Q4W5G0 525 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 EXOSC6Q5RKV6 272 aaKnown RBP12.45□□□□□ -0.42
SHMT2-228ENST00000557302 SLC30A6Q6NXT4 461 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 CDC73Q6P1J9 531 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 MSANTD1Q6ZTZ1 278 aa12.45□□□□□ -0.42
SHMT2-228ENST00000557302 C6orf120Q7Z4R8 191 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms