RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 PTOV1Q86YD1 416 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 DND1Q8IYX4 353 aaKnown RBP10.09□□□□□ -0.79
SHMT2-218ENST00000555213 SLC15A4Q8N697 577 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 TRIML2Q8N7C3 387 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 ZNF615Q8N8J6 731 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 TEX19Q8NA77 164 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 OR56A1Q8NGH5 318 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 OR4A15Q8NGL6 344 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 C16orf52Q8NHV5 167 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 TP53INP1Q96A56 240 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 SLCO4A1Q96BD0 722 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 CCDC124Q96CT7 223 aaKnown RBP10.09□□□□□ -0.79
SHMT2-218ENST00000555213 ASB9Q96DX5 294 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 ELP4Q96EB1 424 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 MAGED4Q96JG8 741 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 C5orf34Q96MH7 638 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 ITPAQ9BY32 194 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.09□□□□□ -0.79
SHMT2-218ENST00000555213 ALG2Q9H553 416 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 ZCCHC3Q9NUD5 404 aaKnown RBP10.09□□□□□ -0.79
SHMT2-218ENST00000555213 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-218ENST00000555213 EGFL7Q9UHF1 273 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 C19orf53Q9UNZ5 99 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-218ENST00000555213 L3MBTL1Q9Y468 752 aa10.09□□□□□ -0.79
SHMT2-218ENST00000555213 HEMK1Q9Y5R4 338 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-218ENST00000555213 SPTA1P02549 2419 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 ITPR1Q14643 2758 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 TRAV17A0A0B4J275 112 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 TCRBV5S2A0A599 114 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 TCRBV3S1A0A5B6 114 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 TTC36A6NLP5 189 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 A8MVJ9 347 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 UPK1AO00322 258 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 ACOX3O15254 700 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 EMC8O43402 210 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 PRKNO60260 465 aaPredicted RBP10.08□□□□□ -0.8
SHMT2-218ENST00000555213 TNFRSF21O75509 655 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 GCM2O75603 506 aaPredicted RBP10.08□□□□□ -0.8
SHMT2-218ENST00000555213 CIB2O75838 187 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 KRT36O76013 467 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 ANP32DO95626 131 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 WDPCPO95876 746 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 CLPSP04118 112 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 NCK1P16333 377 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 S1PR1P21453 382 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 UQCRC2P22695 453 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 TRHRP34981 398 aaPredicted RBP10.08□□□□□ -0.8
SHMT2-218ENST00000555213 KRT20P35900 424 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 HLCSP50747 726 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 KLRB1Q12918 225 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 RGNQ15493 299 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 MAPK11Q15759 364 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 FHL5Q5TD97 284 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 IFNEQ86WN2 208 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 ZZZ3Q8IYH5 903 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 C10orf67Q8IYJ2 551 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 SIMC1Q8NDZ2 872 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 SFXN5Q8TD22 340 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 SLC39A7Q92504 469 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 HAS2Q92819 552 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 DUS3LQ96G46 650 aaKnown RBP10.08□□□□□ -0.8
SHMT2-218ENST00000555213 RASL10BQ96S79 203 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 SH3GL1Q99961 368 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 ECSITQ9BQ95 431 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 SERHL2Q9H4I8 314 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 HPF1Q9NWY4 346 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 NTMQ9P121 344 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 ACTR3BQ9P1U1 418 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 VPS4AQ9UN37 437 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 B3GNT3Q9Y2A9 372 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 OR10H1Q9Y4A9 318 aa10.08□□□□□ -0.8
SHMT2-218ENST00000555213 RNF103-CHMP3A0A140T963 221 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 PRAMEF27A3QJZ7 478 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 FRG2CA6NGY1 282 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 TMEM229AB2RXF0 380 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 MAN1A2O60476 641 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 PSMG1O95456 288 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 PDGFAP04085 211 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 BMP2P12643 396 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 CD46P15529 392 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 GGT1P19440 569 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 DRD5P21918 477 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 PPICP45877 212 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 CCT3P49368 545 aaKnown RBP10.07□□□□□ -0.8
SHMT2-218ENST00000555213 PRIM2P49643 509 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 EMDP50402 254 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 NR0B1P51843 470 aaKnown RBP10.07□□□□□ -0.8
SHMT2-218ENST00000555213 PRKAG1P54619 331 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 CASP9P55211 416 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 RPP38P78345 283 aaKnown RBP10.07□□□□□ -0.8
SHMT2-218ENST00000555213 PLCXD2Q0VAA5 305 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 DUSP8Q13202 625 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 TP53BP2Q13625 1128 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 TUBA3CQ13748 450 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 ZNF169Q14929 603 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-218ENST00000555213 OR1C1Q15619 314 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 NNATQ16517 81 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.07□□□□□ -0.8
SHMT2-218ENST00000555213 SAXO2Q658L1 398 aa10.07□□□□□ -0.8
SHMT2-218ENST00000555213 GLYATQ6IB77 296 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms