RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TRIM8Q9BZR9 551 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 OR2B2Q9GZK3 357 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 KLRF1Q9NZS2 232 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 WIF1Q9Y5W5 379 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 CACNA1DQ01668 2161 aa14.64□□□□□ -0.07
CCDC88C-209ENST00000554872 PKDREJQ9NTG1 2253 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 C19orf84I3L1E1 186 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 CTIFO43310 598 aaKnown RBP14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 REM1O75628 298 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 TOXO94900 526 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 ACTL6AO96019 429 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 BCKDHAP12694 445 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 PRF1P14222 555 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 IL12BP29460 328 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 RPL3P39023 403 aaKnown RBP14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 KIR3DL1P43629 444 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 SERPINB4P48594 390 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 GAS1P54826 345 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 C21orf58P58505 322 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 ZNF155Q12901 538 aaPredicted RBP14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 ZNHIT3Q15649 155 aaPredicted RBP14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 SMU1Q2TAY7 513 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 DESI1Q6ICB0 168 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 ZCCHC23Q6ZST2 131 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 LARP4Q71RC2 724 aaKnown RBP eCLIP14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 GDF7Q7Z4P5 450 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 EXOC3L1Q86VI1 746 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 PLCZ1Q86YW0 608 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 SLC44A2Q8IWA5 706 aaPredicted RBP14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 MCEMP1Q8IX19 187 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 DDIASQ8IXT1 998 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 WDSUB1Q8N9V3 476 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 ADOQ96SZ5 270 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 GALNT9Q9HCQ5 603 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 Q9N2J8 555 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 ATP6V1HQ9UI12 483 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 FIS1Q9Y3D6 152 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 OR10H1Q9Y4A9 318 aa14.63□□□□□ -0.07
CCDC88C-209ENST00000554872 LYPLA1O75608 230 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 SERPINE1P05121 402 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 MSX1P28360 303 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 SRD5A2P31213 254 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 ZFP36L2P47974 494 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 ACSF3Q4G176 576 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 ZNF385BQ569K4 471 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 LACC1Q8IV20 430 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 NUDCD3Q8IVD9 361 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 NATD1Q8N6N6 113 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 FAM83FQ8NEG4 500 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 PSMA8Q8TAA3 256 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 C14orf79Q96F83 325 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 TSSK3Q96PN8 268 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 C3orf14Q9HBI5 128 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 FAM120CQ9NX05 1096 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 ASIC5Q9NY37 505 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 TNFRSF10DQ9UBN6 386 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 ZDHHC2Q9UIJ5 367 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 HAO1Q9UJM8 370 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 MRTO4Q9UKD2 239 aaKnown RBP14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 MYO9AB2RTY4 2548 aa14.62□□□□□ -0.07
CCDC88C-209ENST00000554872 C15orf38-AP3S2A0A0A6YYH1 394 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 A0A0G2JNJ9 132 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 CD8B2A6NJW9 211 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 GNB5O14775 395 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 SCAMP2O15127 329 aaKnown RBP14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 TRAPPC6AO75865 159 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 ZWINTO95229 277 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 IL33O95760 270 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 EPPINO95925 133 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 PRPS2P11908 318 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 CPN1P15169 458 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 GRK2P25098 689 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 EVI2BP34910 448 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 GCKP35557 465 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 TIMP3P35625 211 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 HPCAL1P37235 193 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 ADH7P40394 386 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 TRPC1P48995 793 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 PSMD4P55036 377 aaKnown RBP14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 DECR1Q16698 335 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 SLC25A35Q3KQZ1 300 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 GALNTL6Q49A17 601 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 VPS26BQ4G0F5 336 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 ATP6AP1LQ52LC2 224 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 EXOSC6Q5RKV6 272 aaKnown RBP14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 C6orf136Q5SQH8 315 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 ZCCHC12Q6PEW1 402 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 ZNF551Q7Z340 670 aaPredicted RBP14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 LRRC34Q8IZ02 419 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 CDRT4Q8N9R6 151 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 OR4N2Q8NGD1 307 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 CEP70Q8NHQ1 597 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 MS4A4EQ96PG1 132 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 UGT2B28Q9BY64 529 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 HHATLQ9HCP6 504 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 KCNJ16Q9NPI9 418 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 Q9UFV3 132 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 CBLCQ9ULV8 474 aa14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.61□□□□□ -0.07
CCDC88C-209ENST00000554872 TACC2O95359 2948 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms