RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 HMGN4O00479 90 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 AGR2O95994 175 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 OR12D1P0DN82 309 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 ESRRAP11474 423 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 ETFAP13804 333 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 NAGAP17050 411 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 PIGAP37287 484 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 CASRP41180 1078 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 MTPNP58546 118 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 POU6F2P78424 691 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 MRPS22P82650 360 aaKnown RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 OC90Q02509 493 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 FADDQ13158 208 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 SELPLGQ14242 412 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 RGNQ15493 299 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 DECR1Q16698 335 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 ZNF791Q3KP31 576 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 NANOGP8Q6NSW7 305 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 IGFL3Q6UXB1 125 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 IL20RBQ6UXL0 311 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 GPALPP1Q8IXQ4 340 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 DND1Q8IYX4 353 aaKnown RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 OR8J3Q8NGG0 315 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 C9orf43Q8TAL5 461 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 XAGE5Q8WWM1 108 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 HAS2Q92819 552 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 SPACA9Q96E40 222 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 SH3GL1Q99961 368 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 GPATCH1Q9BRR8 931 aaKnown RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 THUMPD3Q9BV44 507 aaKnown RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 TRIM45Q9H8W5 580 aaPredicted RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 NANOGQ9H9S0 305 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 HPF1Q9NWY4 346 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 LRFN1Q9P244 771 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 MRTO4Q9UKD2 239 aaKnown RBP11.28□□□□□ -0.6
SHMT2-209ENST00000553949 TP53TG5Q9Y2B4 290 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 USP24Q9UPU5 2620 aa11.28□□□□□ -0.6
SHMT2-209ENST00000553949 OR6C70A6NIJ9 312 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 ERVH48-1M5A8F1 160 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 TSPAN2O60636 221 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 REM1O75628 298 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 PPM1BO75688 479 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 UBOX5O94941 541 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 KCNK2O95069 426 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 IL33O95760 270 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 AK1P00568 194 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 IGKV1D-16P01601 117 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 T-ENOLP0DO92 83 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 BMP2P12643 396 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 GPX2P18283 190 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 CALB2P22676 271 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 SLC6A2P23975 617 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 IL12BP29460 328 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 KRT20P35900 424 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 RFX3P48380 749 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 CD97P48960 835 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 TMED10P49755 219 aaKnown RBP11.27□□□□□ -0.61
SHMT2-209ENST00000553949 MNAT1P51948 309 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 FBXW4P57775 412 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 DSTNP60981 165 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 OR1C1Q15619 314 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 NTRK2Q16620 822 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 LACTB2Q53H82 288 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-209ENST00000553949 DCST2Q5T1A1 773 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 CCNJQ5T5M9 372 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 ATAD3BQ5T9A4 648 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 HEPHL1Q6MZM0 1159 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 C8orf82Q6P1X6 216 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-209ENST00000553949 FIGNL1Q6PIW4 674 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 ASB18Q6ZVZ8 466 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 C16orf62Q7Z3J2 963 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 GALNT10Q86SR1 603 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 ZNF227Q86WZ6 799 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 CYP4Z2PQ8N1L4 340 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 C10orf111Q8N326 155 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 ZADH2Q8N4Q0 377 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 EXD3Q8N9H8 876 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 FAM13CQ8NE31 585 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 CHDHQ8NE62 594 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-209ENST00000553949 OR10G3Q8NGC4 313 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 OR5M3Q8NGP4 307 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 FAM110BQ8TC76 370 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 DIO2Q92813 273 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 EFHD2Q96C19 240 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-209ENST00000553949 SGCZQ96LD1 299 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 COL21A1Q96P44 957 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 SIGLEC12Q96PQ1 595 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 ADOQ96SZ5 270 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 HOPXQ9BPY8 73 aaPredicted RBP11.27□□□□□ -0.61
SHMT2-209ENST00000553949 EXD2Q9NVH0 621 aa11.27□□□□□ -0.61
SHMT2-209ENST00000553949 THUMPD1Q9NXG2 353 aaKnown RBP11.27□□□□□ -0.61
SHMT2-209ENST00000553949 C15orf38-AP3S2A0A0A6YYH1 394 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 PRAMEF27A3QJZ7 478 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 ABCB7O75027 752 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 UGT2B11O75310 529 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 TNFRSF21O75509 655 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 NEURL1O76050 574 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 NUDT7P0C024 238 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 TNFSF10P50591 281 aa11.26□□□□□ -0.61
SHMT2-209ENST00000553949 PNLIPRP2P54317 469 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms