RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FAM183AA6NL82 134 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC9A3R1O14745 358 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 AIFM1O95831 613 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 PAK4O96013 591 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ADH1CP00326 375 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 THY1P04216 161 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 FUT1P19526 365 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 DRD3P35462 400 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 TRIM23P36406 574 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 PRDX1Q06830 199 aaKnown RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 RPA4Q13156 261 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ASAH1Q13510 395 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ARHGAP19Q14CB8 494 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 MLC1Q15049 377 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF311Q5JNZ3 666 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 C3orf38Q5JPI3 329 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 DDI2Q5TDH0 399 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CD300LDQ6UXZ3 194 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC36A4Q6YBV0 504 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF730Q6ZMV8 503 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 QSOX2Q6ZRP7 698 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 GALNT12Q8IXK2 581 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ACOT4Q8N9L9 421 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 IL17RCQ8NAC3 791 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 BBS10Q8TAM1 723 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SPPL3Q8TCT6 385 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 MS4A6EQ96DS6 147 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SENP5Q96HI0 755 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 OR2B2Q9GZK3 357 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC38A1Q9H2H9 487 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC6A20Q9NP91 592 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 FGF20Q9NP95 211 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 B3GAT2Q9NPZ5 323 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 PRSS16Q9NQE7 514 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 PRDM7Q9NQW5 492 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SPHK1Q9NYA1 384 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 TAS2R7Q9NYW3 318 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 NPAP1Q9NZP6 1156 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SNX7Q9UNH6 387 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ASB4Q9Y574 426 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CSNK1G3Q9Y6M4 447 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 KNL1Q8NG31 2342 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SPTBP11277 2137 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CENPVL1A0A0U1RR11 272 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 TMEM129A0AVI4 362 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CCDC182A6NF36 153 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CD8B2A6NJW9 211 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CENPXA8MT69 81 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CASKO14936 926 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 HRO43593 1189 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 FGF19O95750 216 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 EIF2S1P05198 315 aaKnown RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CD8BP10966 210 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ACADMP11310 421 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF24P17028 368 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CELP19835 753 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 S100A1P23297 94 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 MYL9P24844 172 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 NTSP30990 170 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 DDOSTP39656 456 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC1A3P43003 542 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 OMPP47874 163 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CDH11P55287 796 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 HTRA4P83105 476 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 RAB40BQ12829 278 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF155Q12901 538 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 TPBGQ13641 420 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 FGL2Q14314 439 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC9A5Q14940 896 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 KLHL22Q53GT1 634 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF628Q5EBL2 1059 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC25A30Q5SVS4 291 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC35F1Q5T1Q4 408 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CNIH2Q6PI25 160 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 XKRXQ6PP77 449 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ADAMTSL4Q6UY14 1074 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 VASH1Q7L8A9 365 aaPredicted RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 NATD1Q8N6N6 113 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CLDN22Q8N7P3 220 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 TMEM145Q8NBT3 493 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF485Q8NCK3 441 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC7A6Q92536 515 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SUSD6Q92537 303 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 UFD1Q92890 307 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 OTULINQ96BN8 352 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 PAWRQ96IZ0 340 aaKnown RBP7.03□□□□□ -1.28
LIMA1-213ENST00000552720 RNF170Q96K19 258 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ART5Q96L15 291 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CAMK1GQ96NX5 476 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 TMEM246Q9BRR3 403 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ARHGAP9Q9BRR9 750 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 SLC22A4Q9H015 551 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 BCL2L10Q9HD36 194 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 MOSPD1Q9UJG1 213 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CLCA2Q9UQC9 943 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 LIPT1Q9Y234 373 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 CLCA3PQ9Y6N3 262 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 FANCMQ8IYD8 2048 aa7.03□□□□□ -1.28
LIMA1-213ENST00000552720 ANKRD34BA5PLL1 514 aa7.02□□□□□ -1.29
LIMA1-213ENST00000552720 TBC1D3BA6NDS4 549 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms