RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 CYP27C1Q4G0S4 372 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 IQCCQ4KMZ1 466 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 CCNJQ5T5M9 372 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 TYW3Q6IPR3 259 aaKnown RBP28.25■■■□□ 2.11
CCM2-219ENST00000544363 MORN4Q8NDC4 146 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 SLC46A1Q96NT5 459 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 MTHFD2LQ9H903 347 aaPredicted RBP28.25■■■□□ 2.11
CCM2-219ENST00000544363 CFL2Q9Y281 166 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 CCDC88CQ9P219 2028 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 STX11O75558 287 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 ALPPP05187 535 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 SFT2D3Q587I9 215 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 NPSR1Q6W5P4 371 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 KBTBD2Q8IY47 623 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 WDR36Q8NI36 951 aaKnown RBP28.25■■■□□ 2.11
CCM2-219ENST00000544363 PROX1Q92786 737 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 CIB1Q99828 191 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 ITPAQ9BY32 194 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 MKLN1Q9UL63 735 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 SH3GLB1Q9Y371 365 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 PCDHGA3Q9Y5H0 932 aa28.25■■■□□ 2.11
CCM2-219ENST00000544363 SPAARA0A1B0GVQ0 90 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 SAC3D1A6NKF1 404 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 GNGT2O14610 69 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 CT45A8P0DMV1 189 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 CT45A9P0DMV2 189 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 TRHRP34981 398 aaPredicted RBP28.24■■■□□ 2.11
CCM2-219ENST00000544363 OR1E2P47887 323 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 CT45A2Q5DJT8 189 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 IZUMO2Q6UXV1 221 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 ZG16BQ96DA0 208 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 ZNF354BQ96LW1 612 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 NUDT9Q9BW91 350 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 SAP130Q9H0E3 1048 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 QRSL1Q9H0R6 528 aaKnown RBP28.24■■■□□ 2.11
CCM2-219ENST00000544363 Q9N2J8 555 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 THSD1Q9NS62 852 aa28.24■■■□□ 2.11
CCM2-219ENST00000544363 PRAMEF25A6NGN4 478 aa28.23■■■□□ 2.11
CCM2-219ENST00000544363 KCNK2O95069 426 aa28.23■■■□□ 2.11
CCM2-219ENST00000544363 PABPC4LP0CB38 370 aaKnown RBP28.23■■■□□ 2.11
CCM2-219ENST00000544363 ASCL5Q7RTU5 278 aa28.23■■■□□ 2.11
CCM2-219ENST00000544363 OR1N1Q8NGS0 311 aa28.23■■■□□ 2.11
CCM2-219ENST00000544363 APOBEC4Q8WW27 367 aaKnown RBP28.23■■■□□ 2.11
CCM2-219ENST00000544363 RMND5BQ96G75 393 aaPredicted RBP28.23■■■□□ 2.11
CCM2-219ENST00000544363 COQ10BQ9H8M1 238 aa28.23■■■□□ 2.11
CCM2-219ENST00000544363 POLE3Q9NRF9 147 aa28.23■■■□□ 2.11
CCM2-219ENST00000544363 COPS7AQ9UBW8 275 aa28.23■■■□□ 2.11
CCM2-219ENST00000544363 OAZ3Q9UMX2 235 aa28.23■■■□□ 2.11
CCM2-219ENST00000544363 GPR55Q9Y2T6 319 aaPredicted RBP28.23■■■□□ 2.11
CCM2-219ENST00000544363 CUL9Q8IWT3 2517 aa28.23■■■□□ 2.11
CCM2-219ENST00000544363 CSRP1P21291 193 aaKnown RBP28.22■■■□□ 2.11
CCM2-219ENST00000544363 KCNC4Q03721 635 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 PUM1Q14671 1186 aaKnown RBP eCLIP28.22■■■□□ 2.11
CCM2-219ENST00000544363 NCF4Q15080 339 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 AP1ARQ63HQ0 302 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 OR2T5Q6IEZ7 315 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 FIGNL1Q6PIW4 674 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 TMEM205Q6UW68 189 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 TSEN54Q7Z6J9 526 aaKnown RBP28.22■■■□□ 2.11
CCM2-219ENST00000544363 HMGN2P46Q86SG4 172 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 EPHX4Q8IUS5 362 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 ZNF619Q8N2I2 560 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 OR2T29Q8NH02 315 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 TMBIM1Q969X1 311 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 BTBD9Q96Q07 612 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 C9orf16Q9BUW7 83 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 PINK1Q9BXM7 581 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 TRIM45Q9H8W5 580 aaPredicted RBP28.22■■■□□ 2.11
CCM2-219ENST00000544363 FBXO34Q9NWN3 711 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 NDUFAF4Q9P032 175 aa28.22■■■□□ 2.11
CCM2-219ENST00000544363 CNOT11Q9UKZ1 510 aaKnown RBP28.22■■■□□ 2.11
CCM2-219ENST00000544363 IGHV3-20A0A0C4DH32 117 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 C9orf172C9J069 976 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 BRINP1O60477 761 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 DLGAP3O95886 979 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 ZNF26P17031 533 aaPredicted RBP28.21■■■□□ 2.11
CCM2-219ENST00000544363 ZNF311Q5JNZ3 666 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 TMEM164Q5U3C3 297 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 C6orf15Q6UXA7 325 aaPredicted RBP28.21■■■□□ 2.11
CCM2-219ENST00000544363 ZBTB49Q6ZSB9 765 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 OR4N2Q8NGD1 307 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 PMM1Q92871 262 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 ZNF184Q99676 751 aaPredicted RBP28.21■■■□□ 2.11
CCM2-219ENST00000544363 SPRY4Q9C004 299 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 PADI1Q9ULC6 663 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 DIRAS1O95057 198 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 GUSBP08236 651 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 ITGA2P17301 1181 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 PPICP45877 212 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 GPR68Q15743 365 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 C3orf38Q5JPI3 329 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 PEX5LQ8IYB4 626 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 OR52P1PQ8NH57 321 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 PHOX2BQ99453 314 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 VCXQ9H320 206 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 C19orf25Q9UFG5 118 aaPredicted RBP28.21■■■□□ 2.11
CCM2-219ENST00000544363 IFT52Q9Y366 437 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 LRRC42Q9Y546 428 aa28.21■■■□□ 2.11
CCM2-219ENST00000544363 SAGE2PA6NJ88 616 aa28.2■■■□□ 2.1
CCM2-219ENST00000544363 ACOX3O15254 700 aa28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms