RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 ANKRD10Q9NXR5 420 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 PLA2G3Q9NZ20 509 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 MRTO4Q9UKD2 239 aaKnown RBP15.79■□□□□ 0.12
LIG1-204ENST00000542460 OR5H15A6NDH6 313 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 OR6B1O95007 311 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 OR12D1P0DN82 309 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 SFTPCP11686 197 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 CRATP43155 626 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 ST13P50502 369 aaKnown RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 MNAT1P51948 309 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 PSMD4P55036 377 aaKnown RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 POU6F2P78424 691 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 FADDQ13158 208 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 CAPRIN1Q14444 709 aaKnown RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 RGNQ15493 299 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 COX20Q5RI15 118 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 ZNF468Q5VIY5 522 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 IL20RBQ6UXL0 311 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 PRR22Q8IZ63 422 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 HORMAD2Q8N7B1 307 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 XAGE5Q8WWM1 108 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 CDS1Q92903 461 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 SPACA9Q96E40 222 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 OMA1Q96E52 524 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 NSL1Q96IY1 281 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 SH3GL1Q99961 368 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 THUMPD3Q9BV44 507 aaKnown RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 BTBD2Q9BX70 525 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 EXD2Q9NVH0 621 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 THUMPD1Q9NXG2 353 aaKnown RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 TP53TG5Q9Y2B4 290 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 GXYLT2A0PJZ3 443 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 K7EM74 188 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 FXYD1O00168 92 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 HMGN4O00479 90 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 REM1O75628 298 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 PPM1BO75688 479 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 F10P00742 488 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 PDGFAP04085 211 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 ESRRAP11474 423 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 GPX2P18283 190 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 NUP214P35658 2090 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 NUDT2P50583 147 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 PNLIPRP2P54317 469 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 MRPS22P82650 360 aaKnown RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 ZNF791Q3KP31 576 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 SOWAHCQ53LP3 525 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 ATAD3BQ5T9A4 648 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 NANOGP8Q6NSW7 305 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 HACD2Q6Y1H2 254 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 ASB18Q6ZVZ8 466 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 BCORP1Q8N888 145 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 EXD3Q8N9H8 876 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 DIO2Q92813 273 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 RAB8BQ92930 207 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 DOCK10Q96BY6 2186 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 WBP1Q96G27 269 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 RMND5BQ96G75 393 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 SGCZQ96LD1 299 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 HOPXQ9BPY8 73 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 CPPED1Q9BRF8 314 aaPredicted RBP15.78■□□□□ 0.12
LIG1-204ENST00000542460 NANOGQ9H9S0 305 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 LRFN1Q9P244 771 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 KCNE3Q9Y6H6 103 aa15.78■□□□□ 0.12
LIG1-204ENST00000542460 CCT8L1PA6NM43 557 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 DPM1O60762 260 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 ABCB7O75027 752 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 KCNK2O95069 426 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 CBX6O95503 412 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 IL33O95760 270 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 AK1P00568 194 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 ETFAP13804 333 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 IL12BP29460 328 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 CPA2P48052 419 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 OR1C1Q15619 314 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 NTRK2Q16620 822 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 LACTB2Q53H82 288 aaPredicted RBP15.77■□□□□ 0.11
LIG1-204ENST00000542460 CYP4Z2PQ8N1L4 340 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 OR8J3Q8NGG0 315 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 FAM110BQ8TC76 370 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 COL21A1Q96P44 957 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 SLC39A3Q9BRY0 314 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 G6PC3Q9BUM1 346 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 IKZF5Q9H5V7 419 aa15.77■□□□□ 0.11
LIG1-204ENST00000542460 OR6C70A6NIJ9 312 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 TP53I11O14683 189 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 TSPAN2O60636 221 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 NEURL1O76050 574 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 CALB2P22676 271 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 TNFSF10P50591 281 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 MTPNP58546 118 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 DSTNP60981 165 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.76■□□□□ 0.11
LIG1-204ENST00000542460 DCST2Q5T1A1 773 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 SPINK14Q6IE38 97 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 HEPHL1Q6MZM0 1159 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 RTL4Q6ZR62 310 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 NUP54Q7Z3B4 507 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 C16orf62Q7Z3J2 963 aa15.76■□□□□ 0.11
LIG1-204ENST00000542460 GOLM1Q8NBJ4 401 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms