RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 GPC1P35052 558 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 GAS1P54826 345 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 HBA1P69905 142 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 RPP38P78345 283 aaKnown RBP11.87□□□□□ -0.51
VPS28-216ENST00000533806 PLGLB1Q02325 96 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 RBPJQ06330 500 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 ZNF155Q12901 538 aaPredicted RBP11.87□□□□□ -0.51
VPS28-216ENST00000533806 C3AR1Q16581 482 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 C1QL3Q5VWW1 255 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 TIGD3Q6B0B8 471 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 SLC30A6Q6NXT4 461 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 ARHGAP11AQ6P4F7 1023 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 ZCCHC12Q6PEW1 402 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 TRILQ7L0X0 811 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 DOLPP1Q86YN1 238 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 CDRT4Q8N9R6 151 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 WDSUB1Q8N9V3 476 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 SLC16A11Q8NCK7 471 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 SSC4DQ8WTU2 575 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 CKAP2Q8WWK9 683 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 C16orf58Q96GQ5 468 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 GNRHR2Q96P88 292 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 MS4A4EQ96PG1 132 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 OR52B2Q96RD2 323 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 C3orf14Q9HBI5 128 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 GALNT9Q9HCQ5 603 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 INTS9Q9NV88 658 aaKnown RBP11.87□□□□□ -0.51
VPS28-216ENST00000533806 GPATCH2Q9NW75 528 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 CBLCQ9ULV8 474 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 BOKQ9UMX3 212 aaPredicted RBP11.87□□□□□ -0.51
VPS28-216ENST00000533806 LIPGQ9Y5X9 500 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 USH1CQ9Y6N9 552 aa11.87□□□□□ -0.51
VPS28-216ENST00000533806 ZGRF1Q86YA3 2104 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 GXYLT2A0PJZ3 443 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 FADS1O60427 444 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 PDE9AO76083 593 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 TGDSO95455 350 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 IL33O95760 270 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 HMGN2P05204 90 aaKnown RBP11.86□□□□□ -0.51
VPS28-216ENST00000533806 ACP2P11117 423 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 CYP4B1P13584 511 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 ENDOUP21128 410 aaKnown RBP11.86□□□□□ -0.51
VPS28-216ENST00000533806 PTPN6P29350 595 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 GABRA3P34903 492 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 PTGS2P35354 604 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 ZFP36L2P47974 494 aaKnown RBP11.86□□□□□ -0.51
VPS28-216ENST00000533806 MAN2A2P49641 1150 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 PRKAG1P54619 331 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 UFM1P61960 85 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 EFR3AQ14156 821 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 SLC10A1Q14973 349 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 DUSP5Q16690 384 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 PGS1Q32NB8 556 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 LSM12Q3MHD2 195 aaKnown RBP11.86□□□□□ -0.51
VPS28-216ENST00000533806 EMC4Q5J8M3 183 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 TMEM198Q66K66 360 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 OR4F3Q6IEY1 312 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 PACS2Q86VP3 889 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 CLECL1Q8IZS7 167 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 FAM57AQ8TBR7 257 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 LRRC8CQ8TDW0 803 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 PIK3R3Q92569 461 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 EFHD2Q96C19 240 aaPredicted RBP11.86□□□□□ -0.51
VPS28-216ENST00000533806 TMCO6Q96DC7 493 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 ZNF597Q96LX8 424 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 DPY30Q9C005 99 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 METTL7AQ9H8H3 244 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 NEUROD4Q9HD90 331 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 Q9N2J8 555 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 SDR39U1Q9NRG7 319 aaPredicted RBP11.86□□□□□ -0.51
VPS28-216ENST00000533806 GIN1Q9NXP7 522 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 C15orf41Q9Y2V0 281 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 OR10H1Q9Y4A9 318 aa11.86□□□□□ -0.51
VPS28-216ENST00000533806 TRGV8A0A0C4DH27 118 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 PRSS51A0A1B0GVH4 220 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 C2orf72A6NCS6 295 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 PRAMEF25A6NGN4 478 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 AQP7O14520 342 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 SNPHO15079 494 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 HCN1O60741 890 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 HPNP05981 417 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 ELAVL4P26378 380 aaKnown RBP11.85□□□□□ -0.51
VPS28-216ENST00000533806 KIR3DL1P43629 444 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 CCT3P49368 545 aaKnown RBP11.85□□□□□ -0.51
VPS28-216ENST00000533806 MRPL19P49406 292 aaKnown RBP11.85□□□□□ -0.51
VPS28-216ENST00000533806 CLNS1AP54105 237 aaKnown RBP11.85□□□□□ -0.51
VPS28-216ENST00000533806 MRPS22P82650 360 aaKnown RBP11.85□□□□□ -0.51
VPS28-216ENST00000533806 PRR5P85299 388 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 ZNHIT3Q15649 155 aaPredicted RBP11.85□□□□□ -0.51
VPS28-216ENST00000533806 DECR1Q16698 335 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 DPY19L1Q2PZI1 675 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 VPS26BQ4G0F5 336 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 SPANXN4Q5MJ08 99 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 PAOXQ6QHF9 649 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 FJX1Q86VR8 437 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 SFXN5Q8TD22 340 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 MAGEB18Q96M61 343 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 PHF12Q96QT6 1004 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 DMRTA2Q96SC8 542 aa11.85□□□□□ -0.51
VPS28-216ENST00000533806 OSBPL11Q9BXB4 747 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms