RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 C11orf24Q96F05 449 aaPredicted RBP10.29□□□□□ -0.76
VPS28-214ENST00000531032 SFXN2Q96NB2 322 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 TMEM237Q96Q45 408 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 ADOQ96SZ5 270 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 GSX1Q9H4S2 264 aaPredicted RBP10.29□□□□□ -0.76
VPS28-214ENST00000531032 ANKRA2Q9H9E1 313 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 PFDN4Q9NQP4 134 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 PACSIN3Q9UKS6 424 aa10.29□□□□□ -0.76
VPS28-214ENST00000531032 A8MXE2 369 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 DLX3O60479 287 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 ZIC3O60481 467 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 PLOD3O60568 738 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 ULK1O75385 1050 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 NME6O75414 186 aaPredicted RBP10.28□□□□□ -0.76
VPS28-214ENST00000531032 SUPT7LO94864 414 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 CD53P19397 219 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 TAC1P20366 129 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 GRK2P25098 689 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 IL12BP29460 328 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 HOXC12P31275 282 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 GSTM5P46439 218 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 PCYT1AP49585 367 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 PNLIPRP2P54317 469 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 B3GALT5-AS1P59052 145 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 ACSM2AQ08AH3 577 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 HEPACAMQ14CZ8 416 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 BCL2A1Q16548 175 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 ACSM2BQ68CK6 577 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 GALNT18Q6P9A2 607 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 TIFABQ6ZNK6 161 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 GPRIN3Q6ZVF9 776 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 LARP4Q71RC2 724 aaKnown RBP eCLIP10.28□□□□□ -0.76
VPS28-214ENST00000531032 TRMT10CQ7L0Y3 403 aaKnown RBP10.28□□□□□ -0.76
VPS28-214ENST00000531032 LCA5Q86VQ0 697 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 GRAMD2AQ8IUY3 354 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 WFDC11Q8NEX6 87 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 EXOSC8Q96B26 276 aaKnown RBP10.28□□□□□ -0.76
VPS28-214ENST00000531032 SHCBP1LQ9BZQ2 653 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 STMN4Q9H169 189 aaPredicted RBP10.28□□□□□ -0.76
VPS28-214ENST00000531032 FOLH1BQ9HBA9 442 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 SLC35C2Q9NQQ7 365 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 DKKL1Q9UK85 242 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 TESMINQ9Y4I5 508 aa10.28□□□□□ -0.76
VPS28-214ENST00000531032 A0A1W2PNV4 684 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 GNG14A0A1W2PPG7 69 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 MSTNO14793 375 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 TGM6O95932 706 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 ENO1P06733 434 aaKnown RBP10.27□□□□□ -0.77
VPS28-214ENST00000531032 CRHP06850 196 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 ABHD2P08910 425 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 DPP4P27487 766 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 GCAP28676 217 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 HMOX2P30519 316 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 TIA1P31483 386 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS28-214ENST00000531032 EVI2BP34910 448 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 KRT20P35900 424 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 HTR6P50406 440 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 PRKAA2P54646 552 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 DIO3P55073 304 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 MRPS22P82650 360 aaKnown RBP10.27□□□□□ -0.77
VPS28-214ENST00000531032 PSG6Q00889 435 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 LCP2Q13094 533 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 POU4F3Q15319 338 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 TEX35Q5T0J7 233 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 OR5M10Q6IEU7 315 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 KRTAP1-3Q8IUG1 177 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 FAM9CQ8IZT9 166 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 FADS6Q8N9I5 356 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 OR7G2Q8NG99 324 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 OR4N2Q8NGD1 307 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 METTL6Q8TCB7 284 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 C16orf78Q8WTQ4 265 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 MTBPQ96DY7 904 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 APIPQ96GX9 242 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 NEUROD4Q9HD90 331 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 GIMAP4Q9NUV9 329 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 BEX4Q9NWD9 120 aaPredicted RBP10.27□□□□□ -0.77
VPS28-214ENST00000531032 SIRT5Q9NXA8 310 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 TAS2R9Q9NYW1 312 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 TMEM216Q9P0N5 145 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 STK38LQ9Y2H1 464 aa10.27□□□□□ -0.77
VPS28-214ENST00000531032 SERTM1A2A2V5 107 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 C17orf51A8MQB3 221 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 DDCP20711 480 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 IMPDH1P20839 514 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 ATP5F1P24539 256 aaPredicted RBP10.26□□□□□ -0.77
VPS28-214ENST00000531032 MPIP34949 423 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 PKNOX1P55347 436 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 DSCR4P56555 118 aaPredicted RBP10.26□□□□□ -0.77
VPS28-214ENST00000531032 OR2A2Q6IF42 318 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 BIVMQ86UB2 503 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 CXorf67Q86X51 503 aaPredicted RBP10.26□□□□□ -0.77
VPS28-214ENST00000531032 SLC22A9Q8IVM8 553 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 SLC44A2Q8IWA5 706 aaPredicted RBP10.26□□□□□ -0.77
VPS28-214ENST00000531032 GSPT2Q8IYD1 628 aaKnown RBP10.26□□□□□ -0.77
VPS28-214ENST00000531032 OR4K17Q8NGC6 315 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 EFHD2Q96C19 240 aaPredicted RBP10.26□□□□□ -0.77
VPS28-214ENST00000531032 STARD4Q96DR4 205 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 L3HYPDHQ96EM0 354 aa10.26□□□□□ -0.77
VPS28-214ENST00000531032 EBPLQ9BY08 206 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms