RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 AGR3Q8TD06 166 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 GFM2Q969S9 779 aaKnown RBP18.83■□□□□ 0.6
VPS28-206ENST00000526734 LMF2Q9BU23 707 aaKnown RBP18.83■□□□□ 0.6
VPS28-206ENST00000526734 SH3BP4Q9P0V3 963 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 FAM215AQ9Y5M1 114 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 WIF1Q9Y5W5 379 aa18.83■□□□□ 0.6
VPS28-206ENST00000526734 EML6Q6ZMW3 1958 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 AKAP10O43572 662 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 DHRS4L1P0CG22 281 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 CRYZQ08257 329 aaKnown RBP18.82■□□□□ 0.6
VPS28-206ENST00000526734 HSPB3Q12988 150 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 TOMM20Q15388 145 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 DECR1Q16698 335 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 SMU1Q2TAY7 513 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 RIPPLY2Q5TAB7 128 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 PLCZ1Q86YW0 608 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 ULK2Q8IYT8 1036 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 CENPHQ9H3R5 247 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 HHATLQ9HCP6 504 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 ATAD3AQ9NVI7 634 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 NTMQ9P121 344 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 ATP6V1HQ9UI12 483 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 ZDHHC2Q9UIJ5 367 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 CBLCQ9ULV8 474 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 ABCG2Q9UNQ0 655 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 EPB41L3Q9Y2J2 1087 aaPredicted RBP18.82■□□□□ 0.6
VPS28-206ENST00000526734 NOTCH2Q04721 2471 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 DNAJC13O75165 2243 aa18.82■□□□□ 0.6
VPS28-206ENST00000526734 PEX11AO75192 247 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 ACTL6AO96019 429 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 GLI4P10075 376 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 ARRB2P32121 409 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 MANFP55145 182 aaKnown RBP18.81■□□□□ 0.6
VPS28-206ENST00000526734 MLC1Q15049 377 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 CDSNQ15517 529 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 C6orf136Q5SQH8 315 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 VASNQ6EMK4 673 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 ZNF551Q7Z340 670 aaPredicted RBP18.81■□□□□ 0.6
VPS28-206ENST00000526734 RPRMLQ8N4K4 120 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 PRPF18Q99633 342 aaKnown RBP18.81■□□□□ 0.6
VPS28-206ENST00000526734 SPOCK3Q9BQ16 436 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 OR2B2Q9GZK3 357 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 PRDM14Q9GZV8 571 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 GALNT9Q9HCQ5 603 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 TNFRSF10DQ9UBN6 386 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 BAIAP2L1Q9UHR4 511 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 MAPRE3Q9UPY8 281 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 PCNX1Q96RV3 2341 aa18.81■□□□□ 0.6
VPS28-206ENST00000526734 SCAMP2O15127 329 aaKnown RBP18.8■□□□□ 0.6
VPS28-206ENST00000526734 SKAP2O75563 359 aaPredicted RBP18.8■□□□□ 0.6
VPS28-206ENST00000526734 CLK3P49761 638 aaKnown RBP18.8■□□□□ 0.6
VPS28-206ENST00000526734 ABCE1P61221 599 aaKnown RBP18.8■□□□□ 0.6
VPS28-206ENST00000526734 CHI3L2Q15782 390 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 ZNF385BQ569K4 471 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 DESI1Q6ICB0 168 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 RTL6Q6ICC9 239 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 ANKRD26P1Q6NSI1 321 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 GDF7Q7Z4P5 450 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 CDRT4Q8N9R6 151 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 FNDC5Q8NAU1 212 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 FAM83FQ8NEG4 500 aaPredicted RBP18.8■□□□□ 0.6
VPS28-206ENST00000526734 OR10Q1Q8NGQ4 319 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 CLHC1Q8NHS4 586 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 HOXB13Q92826 284 aaPredicted RBP18.8■□□□□ 0.6
VPS28-206ENST00000526734 EFHD2Q96C19 240 aaPredicted RBP18.8■□□□□ 0.6
VPS28-206ENST00000526734 TUBGCP3Q96CW5 907 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 PKNOX2Q96KN3 472 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 MS4A4EQ96PG1 132 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 TIMP4Q99727 224 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 KCNJ16Q9NPI9 418 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 SERHLQ9NQF3 203 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 SDHAF3Q9NRP4 125 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 ASIC5Q9NY37 505 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 EIF3LQ9Y262 564 aaKnown RBP18.8■□□□□ 0.6
VPS28-206ENST00000526734 MRPS18CQ9Y3D5 142 aaKnown RBP18.8■□□□□ 0.6
VPS28-206ENST00000526734 RAP2CQ9Y3L5 183 aa18.8■□□□□ 0.6
VPS28-206ENST00000526734 KCNH1O95259 989 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 IL33O95760 270 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 CYP4B1P13584 511 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 SRD5A2P31213 254 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 ZFP36L2P47974 494 aaKnown RBP18.79■□□□□ 0.6
VPS28-206ENST00000526734 PRR5P85299 388 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 ZCCHC12Q6PEW1 402 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 LACC1Q8IV20 430 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 MCEMP1Q8IX19 187 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 WDSUB1Q8N9V3 476 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 ACBD4Q8NC06 268 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 ABTB1Q969K4 478 aaPredicted RBP18.79■□□□□ 0.6
VPS28-206ENST00000526734 CIDECQ96AQ7 238 aaPredicted RBP18.79■□□□□ 0.6
VPS28-206ENST00000526734 ENKD1Q9H0I2 346 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 KCNK9Q9NPC2 374 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 FAM120CQ9NX05 1096 aaKnown RBP18.79■□□□□ 0.6
VPS28-206ENST00000526734 ALKBH4Q9NXW9 302 aa18.79■□□□□ 0.6
VPS28-206ENST00000526734 HSPB2A8KAH6 182 aa18.78■□□□□ 0.6
VPS28-206ENST00000526734 EMC8O43402 210 aa18.78■□□□□ 0.6
VPS28-206ENST00000526734 NME6O75414 186 aaPredicted RBP18.78■□□□□ 0.6
VPS28-206ENST00000526734 EPPINO95925 133 aa18.78■□□□□ 0.6
VPS28-206ENST00000526734 BMP7P18075 431 aa18.78■□□□□ 0.6
VPS28-206ENST00000526734 PRPS1L1P21108 318 aa18.78■□□□□ 0.6
VPS28-206ENST00000526734 EVI2BP34910 448 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms