RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 MAN2A2P49641 1150 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 DIO3P55073 304 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 KCNJ2P63252 427 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 RPP38P78345 283 aaKnown RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 PHC1P78364 1004 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 PLGLB1Q02325 96 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 PLCXD2Q0VAA5 305 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 MAD2L1Q13257 205 aaPredicted RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 ART3Q13508 389 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 EFR3AQ14156 821 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 CDSNQ15517 529 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 TTMPQ5BVD1 217 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 HHATQ5VTY9 493 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 TMEM198Q66K66 360 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 RTL6Q6ICC9 239 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 ZCCHC12Q6PEW1 402 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 PAOXQ6QHF9 649 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 RPTNQ6XPR3 784 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 MAMDC2Q7Z304 686 aaPredicted RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 PACS2Q86VP3 889 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 SLC44A2Q8IWA5 706 aaPredicted RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 ZNF808Q8N4W9 903 aaPredicted RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 ANKRD42Q8N9B4 389 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 ACBD4Q8NC06 268 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 OR8J2Q8NGG1 315 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 CDC26Q8NHZ8 85 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 NEIL3Q8TAT5 605 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 OR5P2Q8WZ92 322 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 MAGED4Q96JG8 741 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 GNRHR2Q96P88 292 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 ADOQ96SZ5 270 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 C1orf50Q9BV19 199 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 BHLHE41Q9C0J9 482 aaPredicted RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 MANSC1Q9H8J5 431 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 DDX18Q9NVP1 670 aaKnown RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 GIN1Q9NXP7 522 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 NOP53Q9NZM5 478 aaKnown RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 SH3BP4Q9P0V3 963 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 SPRR3Q9UBC9 169 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 MRPS18CQ9Y3D5 142 aaKnown RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 KLF2Q9Y5W3 355 aaPredicted RBP8.87□□□□□ -0.99
RNF4-221ENST00000513643 ABCA12Q86UK0 2595 aa8.87□□□□□ -0.99
RNF4-221ENST00000513643 MED12Q93074 2177 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 PKDREJQ9NTG1 2253 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 A0A1W2PRB8 838 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 PRRG2O14669 202 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 BCKDKO14874 412 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 HDAC3O15379 428 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 EMC8O43402 210 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 REM1O75628 298 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 IGKV1D-16P01601 117 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 CYP4B1P13584 511 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 ABOP16442 354 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 HPCAL1P37235 193 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 MANFP55145 182 aaKnown RBP8.86□□□□□ -0.99
RNF4-221ENST00000513643 CASP6P55212 293 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 HSPB3Q12988 150 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 PDCD2Q16342 344 aaPredicted RBP8.86□□□□□ -0.99
RNF4-221ENST00000513643 CPTPQ5TA50 214 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 MFSD12Q6NUT3 480 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 XKRXQ6PP77 449 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 MAVSQ7Z434 540 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 WDR75Q8IWA0 830 aaKnown RBP8.86□□□□□ -0.99
RNF4-221ENST00000513643 CDRT4Q8N9R6 151 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 CEP70Q8NHQ1 597 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 ZFP28Q8NHY6 868 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 ZNF75CPQ92670 426 aaPredicted RBP8.86□□□□□ -0.99
RNF4-221ENST00000513643 TESCQ96BS2 214 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 TMCO6Q96DC7 493 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 FAM120BQ96EK7 910 aaKnown RBP8.86□□□□□ -0.99
RNF4-221ENST00000513643 ATP6V1G3Q96LB4 118 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 ZNF597Q96LX8 424 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 NUF2Q9BZD4 464 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 RTN4RQ9BZR6 473 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 GALNT9Q9HCQ5 603 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 GPATCH2Q9NW75 528 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 CBLCQ9ULV8 474 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 EIF3LQ9Y262 564 aaKnown RBP8.86□□□□□ -0.99
RNF4-221ENST00000513643 FAM215AQ9Y5M1 114 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 GPR45Q9Y5Y3 372 aa8.86□□□□□ -0.99
RNF4-221ENST00000513643 IGLV3-32A0A0A0MS00 114 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 TRGV5A0A0B4J1U4 118 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 GXYLT2A0PJZ3 443 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 PRAMEF25A6NGN4 478 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 NPIPA2E9PIF3 369 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 NPIPA3F8WFD2 350 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 SLCO1B7G3V0H7 640 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 RNASET2O00584 256 aaKnown RBP8.85□□□□□ -0.99
RNF4-221ENST00000513643 ZIC3O60481 467 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 CDC40O60508 579 aaKnown RBP eCLIP8.85□□□□□ -0.991e-6■□□□□ 8.2
RNF4-221ENST00000513643 CBR3O75828 277 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 SASH3O75995 380 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 NGFRP08138 427 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 ALDOCP09972 364 aaKnown RBP8.85□□□□□ -0.99
RNF4-221ENST00000513643 FREM3P0C091 2139 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 ACP2P11117 423 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 DDX5P17844 614 aaKnown RBP8.85□□□□□ -0.99
RNF4-221ENST00000513643 LBPP18428 481 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 LCN1P31025 176 aa8.85□□□□□ -0.99
RNF4-221ENST00000513643 GABRA3P34903 492 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms