RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ATP1B2P14415 290 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 DCTP40126 519 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 PRPS1P60891 318 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 RIN1Q13671 783 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 FBXO48Q5FWF7 155 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 FAM129CQ86XR2 697 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 RCBTB1Q8NDN9 531 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 STEAP2Q8NFT2 490 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 OR52N2Q8NGI0 321 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 YIPF5Q969M3 257 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 RANBP9Q96S59 729 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC38A3Q99624 504 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 WDR18Q9BV38 432 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 PIGVQ9NUD9 493 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 DLC1Q96QB1 1528 aa10.69□□□□□ -0.7
LIMCH1-217ENST00000512946 SMIM28A0A1B0GU29 152 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 TMEM150BA6NC51 233 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 PPP5D1E7EU14 171 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 CACNG3O60359 315 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 GRIN3BO60391 1043 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 FOXD2O60548 495 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 C1QBP02746 253 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 ELK1P19419 428 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 AGXTP21549 392 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 TMEM244Q5VVB8 128 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 DBX2Q6ZNG2 339 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 ERN2Q76MJ5 926 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 LRRTM4Q86VH4 590 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 CACUL1Q86Y37 369 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 ANKK1Q8NFD2 765 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 NDNFQ8TB73 568 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 C17orf62Q9BQA9 187 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 KATNB1Q9BVA0 655 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 TRMT61BQ9BVS5 477 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 PUS1Q9Y606 427 aaKnown RBP eCLIP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 V9GYS6 101 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 C2orf72A6NCS6 295 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 C9J4A7 227 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 GABRR2P28476 465 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 HNRNPKP61978 463 aaKnown RBP eCLIP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 PIGFQ07326 219 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 KDM8Q8N371 416 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 OR4E2Q8NGC2 313 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 PRAP1Q96NZ9 151 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 NAA11Q9BSU3 229 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 PDGFDQ9GZP0 370 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 THSD1Q9NS62 852 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 BACE2Q9Y5Z0 518 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 RNF17Q9BXT8 1623 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 TP53I11O14683 189 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 TAAR5O14804 337 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 PGCP20142 388 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 CXADRP78310 365 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 CAP1Q01518 475 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 TLE1Q04724 770 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 STK11Q15831 433 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF74Q16587 644 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 LIX1LQ8IVB5 337 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 OR4M1Q8NGD0 313 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 OR9A4Q8NGU2 314 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 SLC25A32Q9H2D1 315 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 OR51B5Q9H339 312 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 V9GY05 133 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 C10orf71Q711Q0 1435 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 DDTLA6NHG4 134 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 TMEM200CA6NKL6 621 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 MRPL3P09001 348 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 HLA-DOBP13765 273 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 GIFP27352 417 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 PDZK1IP1Q13113 114 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 TECRLQ5HYJ1 363 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 SLX4IPQ5VYV7 408 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 NCBP2-AS2Q69YL0 99 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 P4HA3Q7Z4N8 544 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 UEVLDQ8IX04 471 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 OR10Z1Q8NGY1 313 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 CTRCQ99895 268 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 SUV39H2Q9H5I1 410 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 RRAGCQ9HB90 399 aa10.68□□□□□ -0.7
LIMCH1-217ENST00000512946 A0A0U1RQK1 487 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SNNO75324 88 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 CNR2P34972 360 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 GALNT2Q10471 571 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 TMEM35AQ53FP2 167 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 YIF1BQ5BJH7 314 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 HENMT1Q5T8I9 393 aaKnown RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 LRFN4Q6PJG9 635 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 MFSD6LQ8IWD5 586 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 CFAP52Q8N1V2 620 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 OR9A1PQ8NGU1 263 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SGK3Q96BR1 496 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 SAP130Q9H0E3 1048 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 PCED1AQ9H1Q7 454 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 RANGRFQ9HD47 186 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 ZNF629Q9UEG4 869 aaPredicted RBP10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 DKKL1Q9UK85 242 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 A0A1B0GV50 99 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 C1orf226A1L170 272 aa10.67□□□□□ -0.7
LIMCH1-217ENST00000512946 GPR39O43194 453 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms