RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 HIST1H2ABP04908 130 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 GABRA5P31644 462 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 AKR1C3P42330 323 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 UBE2MP61081 183 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 ZNF155Q12901 538 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 TARBP2Q15633 366 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 CPSF6Q16630 551 aaKnown RBP eCLIP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 TMEM71Q6P5X7 295 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 NCEH1Q6PIU2 408 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 HIST3H2AQ7L7L0 130 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 IZUMO1Q8IYV9 350 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 OR1S2Q8NGQ3 325 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 HIST1H2ACQ93077 130 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 C14orf79Q96F83 325 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 NSUN3Q9H649 340 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 UNKLQ9H9P5 680 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 TPT1P8Q9HAU6 139 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 BTG4Q9NY30 223 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 ZNF629Q9UEG4 869 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 FZD4Q9ULV1 537 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 WASF3Q9UPY6 502 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 PHYHO14832 338 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC28A2O43868 658 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 GP1BAP07359 652 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 GIPP09681 153 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 ZNF35P13682 527 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 ANXA7P20073 488 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 ABCD3P28288 659 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 PLA2G7Q13093 441 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 C4orf46Q504U0 113 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 C1orf52Q8N6N3 182 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 OR5J2Q8NH18 312 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 PINK1Q9BXM7 581 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 C11orf49Q9H6J7 331 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 ATP13A1Q9HD20 1204 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 A0A0A6YYC8 382 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 I3L1I5 382 aaPredicted RBP11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 OR2T1O43869 369 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 NDUFS3O75489 264 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 RECQL4O94761 1208 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 IGHA2P01877 340 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 CAP2P40123 477 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 ILKQ13418 452 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC10A6Q3KNW5 377 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 INTS6LQ5JSJ4 861 aaKnown RBP11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 SDHAF4Q5VUM1 108 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 RAB12Q6IQ22 244 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 OR52B4Q8NGK2 314 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 OR4C15Q8NGM1 316 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 KLHL5Q96PQ7 755 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC39A8Q9C0K1 460 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 PCDHB10Q9UN67 800 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 CCL27Q9Y4X3 112 aa11.36□□□□□ -0.59
LIMCH1-213ENST00000511496 BTBD17A6NE02 478 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 CLDN4O14493 209 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 PCDH7O60245 1069 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 OTCP00480 354 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 MBP02144 154 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 HLA-DPB1P04440 258 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 ANXA2P07355 339 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 KIR3DL1P43629 444 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 TOMM20Q15388 145 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 OAFQ86UD1 273 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 NR2C2APQ86WQ0 139 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 NKAIN4Q8IVV8 208 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 LINC00116Q8NCU8 138 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 OR4Q3Q8NH05 313 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 EGFL8Q99944 293 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 IFT27Q9BW83 186 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 SUCNR1Q9BXA5 334 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 KLHL1Q9NR64 748 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 TDP1Q9NUW8 608 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 PIM2Q9P1W9 311 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 TRDV1A0A1B0GX56 115 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 NEDD8-MDP1E9PL57 170 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 SELENOWP63302 87 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 E2F1Q01094 437 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 TPBGQ13641 420 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 IFI44LQ53G44 452 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 BEX5Q5H9J7 111 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 UNQ6494/PRO21346Q6UXR6 183 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 MISPQ8IVT2 679 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 OR5M1Q8NGP8 315 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 OR4L1Q8NH43 312 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 THAP4Q8WY91 577 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 GCDHQ92947 438 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 MISP3Q96FF7 219 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 MOGAT1Q96PD6 335 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 PKP4Q99569 1192 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 SOX7Q9BT81 388 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 EBPLQ9BY08 206 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 CHRDQ9H2X0 955 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 PRO1933Q9H354 126 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 MINDY3Q9H8M7 445 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 SEMA3GQ9NS98 782 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 ACER3Q9NUN7 267 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 FBXW11Q9UKB1 542 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 ST3GAL5Q9UNP4 418 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 SLX4Q8IY92 1834 aa11.35□□□□□ -0.59
LIMCH1-213ENST00000511496 C5orf58C9J3I9 102 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms