RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ZNF806P0C7X5 589 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PABPC4LP0CB38 370 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GHRP10912 638 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 NQO1P15559 274 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ACADSP16219 412 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 RPL35AP18077 110 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 VCLP18206 1134 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CCNA2P20248 432 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 M6PRP20645 277 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CSRP1P21291 193 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ACAT1P24752 427 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 HLA-FP30511 346 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PTGER4P35408 488 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SOX6P35712 828 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 OPRL1P41146 370 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 HNF4AP41235 474 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SLCO1A2P46721 670 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 LEPRP48357 1165 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 POU3F4P49335 361 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 DNA2P51530 1060 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 BCAP31P51572 246 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 HMGCS2P54868 508 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 HADHBP55084 474 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GNG11P61952 73 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 MAT1AQ00266 395 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ELAVL2Q12926 359 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SPP2Q13103 211 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 DNAJC3Q13217 504 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ALCAMQ13740 583 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 DMC1Q14565 340 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 IL11RAQ14626 422 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 NONOQ15233 471 aaKnown RBP eCLIP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 KCNJ8Q15842 424 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF74Q16587 644 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 MAPK6Q16659 721 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 KYAT1Q16773 422 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CTU2Q2VPK5 515 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 AARDQ4LEZ3 155 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ANKRD20A4Q4UJ75 823 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 LIN52Q52LA3 116 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 FGD3Q5JSP0 725 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 TPGS2Q68CL5 300 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 OR4A47Q6IF82 309 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SPOPLQ6IQ16 392 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PRR27Q6MZM9 219 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 UGT3A1Q6NUS8 523 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ARMCX5Q6P1M9 558 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SLC25A47Q6Q0C1 308 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 FAM198BQ6UWH4 519 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ADGRD2Q7Z7M1 963 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PRPF39Q86UA1 669 aaKnown RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ITIH5Q86UX2 942 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CDR2LQ86X02 465 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 RALGPS2Q86X27 583 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 NKAIN4Q8IVV8 208 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CDH26Q8IXH8 852 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC36Q8IYA8 594 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ZBED8Q8IZ13 594 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ELMOD2Q8IZ81 293 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 FBXL16Q8N461 479 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CERS5Q8N5B7 392 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SLC37A3Q8NCC5 494 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 OR7A2PQ8NGA2 310 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 OR5T2Q8NGG2 359 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ANGPTL6Q8NI99 470 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 TEX47Q8TBZ9 253 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 PYROXD1Q8WU10 500 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 FAM222BQ8WU58 562 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 KCTD4Q8WVF5 259 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 KCNE4Q8WWG9 221 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 DNAJC9Q8WXX5 260 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SHC3Q92529 594 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 P3H4Q92791 437 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 TMIGD2Q96BF3 282 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 EFHD2Q96C19 240 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 OMA1Q96E52 524 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF486Q96H40 463 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 FAM71F1Q96KD3 344 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CEP170P1Q96L14 293 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CEP19Q96LK0 163 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 C4orf45Q96LM5 186 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GDAP1L1Q96MZ0 367 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CTRCQ99895 268 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 GAL3ST1Q99999 423 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 C9orf16Q9BUW7 83 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 MLPHQ9BV36 600 aaPredicted RBP1.85□□□□□ -2.11
HMGB1-208ENST00000490788 LRRC61Q9BV99 259 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 NT5C3AQ9H0P0 336 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ARMC7Q9H6L4 198 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 TLE6Q9H808 572 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 MARCH7Q9H992 704 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 SLC38A10Q9HBR0 1119 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 CDH20Q9HBT6 801 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 POLD4Q9HCU8 107 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ZDHHC4Q9NPG8 344 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 MAN2C1Q9NTJ4 1040 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ANKEF1Q9NU02 776 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 OLAHQ9NV23 265 aa1.85□□□□□ -2.11
HMGB1-208ENST00000490788 ARMC1Q9NVT9 282 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms