RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 GRAMD1BQ3KR37 738 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 SFT2D3Q587I9 215 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 C3orf38Q5JPI3 329 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 CCNJQ5T5M9 372 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 C6orf15Q6UXA7 325 aaPredicted RBP20.1■□□□□ 0.81
SMC4-221ENST00000489573 NPSR1Q6W5P4 371 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 ICA1LQ8NDH6 482 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 SLC46A1Q96NT5 459 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 KLHL4Q9C0H6 718 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 Q9N2J8 555 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 DNAJB9Q9UBS3 223 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 PADI2Q9Y2J8 665 aa20.1■□□□□ 0.81
SMC4-221ENST00000489573 C9orf172C9J069 976 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 hCG_2039718K7EN88 272 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 PEX1O43933 1283 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 BRINP1O60477 761 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 STX11O75558 287 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 ALPPP05187 535 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 KCNJ5P48544 419 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 DUSP7Q16829 419 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 TMEM164Q5U3C3 297 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 TYW3Q6IPR3 259 aaKnown RBP20.09■□□□□ 0.81
SMC4-221ENST00000489573 PIWIL3Q7Z3Z3 882 aaKnown RBP20.09■□□□□ 0.81
SMC4-221ENST00000489573 GPR32P1Q8NGA4 272 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 PROX1Q92786 737 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 RMND5BQ96G75 393 aaPredicted RBP20.09■□□□□ 0.81
SMC4-221ENST00000489573 C7orf34Q96L11 122 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 NUDT9Q9BW91 350 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 TRIM45Q9H8W5 580 aaPredicted RBP20.09■□□□□ 0.81
SMC4-221ENST00000489573 COPS7AQ9UBW8 275 aa20.09■□□□□ 0.81
SMC4-221ENST00000489573 C19orf25Q9UFG5 118 aaPredicted RBP20.09■□□□□ 0.81
SMC4-221ENST00000489573 FCMRO60667 390 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 FESP07332 822 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 TMEM205Q6UW68 189 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 CACTIN-AS1Q8N1I8 211 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 OR1N1Q8NGS0 311 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 EME1Q96AY2 570 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 VPS50Q96JG6 964 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 BTBD9Q96Q07 612 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 QRSL1Q9H0R6 528 aaKnown RBP20.08■□□□□ 0.81
SMC4-221ENST00000489573 MTHFD2LQ9H903 347 aaPredicted RBP20.08■□□□□ 0.81
SMC4-221ENST00000489573 CACYBPQ9HB71 228 aaKnown RBP20.08■□□□□ 0.81
SMC4-221ENST00000489573 POLE3Q9NRF9 147 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 MKLN1Q9UL63 735 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 ABCG2Q9UNQ0 655 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 DTNAQ9Y4J8 743 aa20.08■□□□□ 0.81
SMC4-221ENST00000489573 IGHV3-20A0A0C4DH32 117 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 SAGE2PA6NJ88 616 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 KCNK2O95069 426 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 PRSS23O95084 383 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 PABPC4LP0CB38 370 aaKnown RBP20.08■□□□□ 0.8
SMC4-221ENST00000489573 CT45A8P0DMV1 189 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 CT45A9P0DMV2 189 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 TNFRSF1BP20333 461 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 CYP27C1Q4G0S4 372 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 CT45A2Q5DJT8 189 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 FIGNL1Q6PIW4 674 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 HMGN2P46Q86SG4 172 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 ZNF619Q8N2I2 560 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 ZNF354BQ96LW1 612 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 SAP130Q9H0E3 1048 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 PADI1Q9ULC6 663 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 GPR55Q9Y2T6 319 aaPredicted RBP20.08■□□□□ 0.8
SMC4-221ENST00000489573 SH3GLB1Q9Y371 365 aa20.08■□□□□ 0.8
SMC4-221ENST00000489573 PTRH2Q9Y3E5 179 aaKnown RBP20.08■□□□□ 0.8
SMC4-221ENST00000489573 SAC3D1A6NKF1 404 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 OR6C76A6NM76 312 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 GNGT2O14610 69 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 KIAA0513O60268 411 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 GUSBP08236 651 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 CD63P08962 238 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 CCNYL3P0C7X3 344 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 OR1E2P47887 323 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 KCNC4Q03721 635 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 TARDBPQ13148 414 aaKnown RBP eCLIP20.07■□□□□ 0.8
SMC4-221ENST00000489573 IQCCQ4KMZ1 466 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 CPEB2Q7Z5Q1 589 aaKnown RBP20.07■□□□□ 0.8
SMC4-221ENST00000489573 PEX5LQ8IYB4 626 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 APOBEC4Q8WW27 367 aaKnown RBP20.07■□□□□ 0.8
SMC4-221ENST00000489573 CIB1Q99828 191 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 PINK1Q9BXM7 581 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 RSPO3Q9BXY4 272 aaPredicted RBP20.07■□□□□ 0.8
SMC4-221ENST00000489573 SPRY4Q9C004 299 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 NTN4Q9HB63 628 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 THSD1Q9NS62 852 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 FOXJ2Q9P0K8 574 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 OR10H1Q9Y4A9 318 aa20.07■□□□□ 0.8
SMC4-221ENST00000489573 EP300Q09472 2414 aaPredicted RBP20.06■□□□□ 0.8
SMC4-221ENST00000489573 ITGA2P17301 1181 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 PPICP45877 212 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 GPR68Q15743 365 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 NNATQ16517 81 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 ZNF311Q5JNZ3 666 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 OR2T5Q6IEZ7 315 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 PAPD4Q6PIY7 484 aaKnown RBP20.06■□□□□ 0.8
SMC4-221ENST00000489573 IZUMO2Q6UXV1 221 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 TMPRSS12Q86WS5 348 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 KBTBD2Q8IY47 623 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 B3GNT7Q8NFL0 401 aa20.06■□□□□ 0.8
SMC4-221ENST00000489573 OR4N2Q8NGD1 307 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms