RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 OR10H2O60403 315 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 NME6O75414 186 aaPredicted RBP13.21□□□□□ -0.29
CUX1-209ENST00000487284 ALBP02768 609 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 FBLP22087 321 aaKnown RBP13.21□□□□□ -0.29
CUX1-209ENST00000487284 PRKACGP22612 351 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 RRM2P31350 389 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 MAP3K8P41279 467 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 EPS8Q12929 822 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 DSG2Q14126 1118 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 DUSP5Q16690 384 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 CYP27C1Q4G0S4 372 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 ARHGAP40Q5TG30 622 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 ZNF385CQ66K41 422 aaPredicted RBP13.21□□□□□ -0.29
CUX1-209ENST00000487284 DGAT2L6Q6ZPD8 337 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 USP51Q70EK9 711 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 OLIG3Q7RTU3 272 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 C16orf62Q7Z3J2 963 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 ZNF605Q86T29 641 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 VWA5B2Q8N398 1253 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 CDRT4Q8N9R6 151 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 CYGBQ8WWM9 190 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 CDS1Q92903 461 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 ZNF354BQ96LW1 612 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 BARD1Q99728 777 aaKnown RBP13.21□□□□□ -0.29
CUX1-209ENST00000487284 PIP5K1AQ99755 562 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 ULBP3Q9BZM4 244 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 ADAP2Q9NPF8 381 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 BATF3Q9NR55 127 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 LANCL2Q9NS86 450 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 SLC22A11Q9NSA0 550 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 LYVE1Q9Y5Y7 322 aa13.21□□□□□ -0.29
CUX1-209ENST00000487284 TEX51A0A1B0GUA7 166 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 EIF4E1BA6NMX2 242 aaKnown RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 C9orf172C9J069 976 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 COQ9O75208 318 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 CBX7O95931 251 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 GNAO1P09471 354 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 RHCEP18577 417 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 S1PR1P21453 382 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 SDHBP21912 280 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 RORAP35398 523 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 BTG2P78543 158 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 MYBPC1Q00872 1141 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 STX4Q12846 297 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 EXOSC7Q15024 291 aaKnown RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 RFX4Q33E94 735 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 ARHGAP11BQ3KRB8 267 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 ANKRD34AQ69YU3 496 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 FAHD1Q6P587 224 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 COX15Q7KZN9 410 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 TMPRSS7Q7RTY8 843 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 WDR53Q7Z5U6 358 aaPredicted RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 GALNT12Q8IXK2 581 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 GALNT15Q8N3T1 639 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 CHDHQ8NE62 594 aaPredicted RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 OR4C15Q8NGM1 316 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 SLC9A6Q92581 669 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 OR1F2PQ96R84 312 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 MBOAT4Q96T53 435 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 STACQ99469 402 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 DDA1Q9BW61 102 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 YIPF2Q9BWQ6 316 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 AKIRIN1Q9H9L7 192 aaPredicted RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 DUSP22Q9NRW4 184 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 SCOCQ9UIL1 159 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 C3orf18Q9UK00 162 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 TESMINQ9Y4I5 508 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 MMACHCQ9Y4U1 282 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 SDK2Q58EX2 2172 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 A8MVJ9 347 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 MEN1O00255 615 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 HS6ST1O60243 411 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 JRKO75564 520 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 CDC123O75794 336 aaPredicted RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 ALOX5P09917 674 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 GALNSP34059 522 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 STT3AP46977 705 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 RAD23AP54725 363 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 DCDP81605 110 aaKnown RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 CHRNEQ04844 493 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 DUSP8Q13202 625 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 BIKQ13323 160 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 ERV3-1Q14264 604 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 NKAIN1Q4KMZ8 207 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 KDM4DQ6B0I6 523 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 TMEM154Q6P9G4 183 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 CYP4Z1Q86W10 505 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 DOK4Q8TEW6 326 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 PELOQ9BRX2 385 aaKnown RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 ZPBPQ9BS86 351 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 PINK1Q9BXM7 581 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 ALOXE3Q9BYJ1 711 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 TOR3AQ9H497 397 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 PNPLA3Q9NST1 481 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 PDP1Q9P0J1 537 aaPredicted RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 KCND3Q9UK17 655 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 FAM32AQ9Y421 112 aaKnown RBP13.2□□□□□ -0.3
CUX1-209ENST00000487284 PCDHGA3Q9Y5H0 932 aa13.2□□□□□ -0.3
CUX1-209ENST00000487284 TNFRSF11BO00300 401 aa13.19□□□□□ -0.3
CUX1-209ENST00000487284 SYT5O00445 386 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms