RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 HBS1LQ9Y450 684 aaKnown RBP4.82□□□□□ -1.64
USP40-213ENST00000483216 IKBKGQ9Y6K9 419 aa4.82□□□□□ -1.64
USP40-213ENST00000483216 BCORQ6W2J9 1755 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 DDX60Q8IY21 1712 aaKnown RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 ZNF831Q5JPB2 1677 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 A0A0B4J203 849 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 IGHV3-38A0A0C4DH36 116 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 TTI1O43156 1089 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 PEX11AO75192 247 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ATP6V1G1O75348 118 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ZNF189O75820 626 aaPredicted RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 PDE5AO76074 875 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 KLHL2O95198 593 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 STAMBPO95630 424 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 MT-ND2P03891 347 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ALOX5P09917 674 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ANKRD34CP0C6C1 535 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 UQCRBP14927 111 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 MUTP22033 750 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 GIFP27352 417 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 SLC1A4P43007 532 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 IFNAR2P48551 515 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 MTTPP55157 894 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ARPC4P59998 168 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 POLR2FP61218 127 aaKnown RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 KRR1Q13601 381 aaKnown RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 PPA1Q15181 289 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 SPANXN4Q5MJ08 99 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 C1QTNF12Q5T7M4 302 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ARMC3Q5W041 872 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 THOC7Q6I9Y2 204 aaKnown RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 SPINK14Q6IE38 97 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 CCDC137Q6PK04 289 aaKnown RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 CDHR3Q6ZTQ4 885 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 NCCRP1Q6ZVX7 275 aaPredicted RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 OTUD6AQ7L8S5 288 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 NLRP9Q7RTR0 991 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 P2RY8Q86VZ1 359 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 MEX3DQ86XN8 651 aaKnown RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 LRRC49Q8IUZ0 686 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ZBED8Q8IZ13 594 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ABHD12Q8N2K0 398 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 TEX26Q8N6G2 289 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 OR2L2Q8NH16 312 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 FAM162AQ96A26 154 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 ECSITQ9BQ95 431 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 PAPOLGQ9BWT3 736 aaKnown RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 RAB11FIP5Q9BXF6 653 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 C5orf66Q9H5L9 145 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 LRRC19Q9H756 370 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 CD209Q9NNX6 404 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 RPS10P5Q9NQ39 176 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 MYO5AQ9Y4I1 1855 aaKnown RBP4.81□□□□□ -1.64
USP40-213ENST00000483216 DOCK2Q92608 1830 aa4.81□□□□□ -1.64
USP40-213ENST00000483216 COL5A3P25940 1745 aaPredicted RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 IGLV4-3A0A075B6K6 122 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 TRAV34A0A0B4J273 112 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 IQANK1A0A1B0GTG1 560 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 SH3PXD2BA1X283 911 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 PDXKO00764 312 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 XPO1O14980 1071 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 EDF1O60869 148 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 POP4O95707 220 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 HSPA4LO95757 839 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 KRT6AP02538 564 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 KRT6BP04259 564 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 RPLP0P05388 317 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 SP9P0CG40 484 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 GZMAP12544 262 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 CTNNA2P26232 953 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 HMOX2P30519 316 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 PKLRP30613 574 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 PTGER3P43115 390 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 KRT6CP48668 564 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 SNRPFP62306 86 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 HPCAP84074 193 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 KLRC3Q07444 240 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 PPIDQ08752 370 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 RCN1Q15293 331 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 CLPPQ16740 277 aaPredicted RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 FAM182AQ5T1J6 154 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 ZNF770Q6IQ21 691 aaPredicted RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 PET117Q6UWS5 81 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 C15orf52Q6ZUT6 534 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 TRMT11Q7Z4G4 463 aaKnown RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 SETD3Q86TU7 594 aaPredicted RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 NT5DC3Q86UY8 548 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 LRRC6Q86X45 466 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 METTL13Q8N6R0 699 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 OR9Q2Q8NGE9 314 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 OR52B6Q8NGF0 335 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 OR5M9Q8NGP3 310 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 PYROXD1Q8WU10 500 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 RASSF5Q8WWW0 418 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 ZNF75CPQ92670 426 aaPredicted RBP4.8□□□□□ -1.64
USP40-213ENST00000483216 DNASE1L2Q92874 299 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 BORCS5Q969J3 196 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 NRBF2Q96F24 287 aa4.8□□□□□ -1.64
USP40-213ENST00000483216 MS4A14Q96JA4 679 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms