RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 SUZ12Q15022 739 aaKnown RBP13.53□□□□□ -0.24
CHD3-211ENST00000481999 MLC1Q15049 377 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 PTGES3Q15185 160 aaKnown RBP13.53□□□□□ -0.24
CHD3-211ENST00000481999 KLHL17Q6TDP4 642 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 CSNK1A1LQ8N752 337 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 AQP11Q8NBQ7 271 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 OR9A4Q8NGU2 314 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 MSANTD3Q96H12 275 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 PHOX2BQ99453 314 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 CAPN10Q9HC96 672 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 MS4A12Q9NXJ0 267 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 P2RX2Q9UBL9 471 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 ZNF780BQ9Y6R6 833 aa13.53□□□□□ -0.24
CHD3-211ENST00000481999 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 CENPVL1A0A0U1RR11 272 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 AGAP5A6NIR3 686 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 CSF2P04141 144 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 CD27P26842 260 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 RGS6P49758 472 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 ERV3-1Q14264 604 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 ARMCX4Q5H9R4 360 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 CCNJQ5T5M9 372 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 ZNF367Q7RTV3 350 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 TAGAPQ8N103 731 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 NATD1Q8N6N6 113 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 B3GNT7Q8NFL0 401 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 GIMAP5Q96F15 307 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 OR7D2Q96RA2 312 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 CDCA4Q9BXL8 241 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 TBC1D17Q9HA65 648 aa13.52□□□□□ -0.24
CHD3-211ENST00000481999 CNOT2Q9NZN8 540 aaKnown RBP13.52□□□□□ -0.24
CHD3-211ENST00000481999 CCDC59Q9P031 241 aaKnown RBP13.52□□□□□ -0.24
CHD3-211ENST00000481999 TLR4O00206 839 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 UPK1BO75841 260 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 PTHP01270 115 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 GASTP01350 101 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 DBTP11182 482 aaKnown RBP13.52□□□□□ -0.25
CHD3-211ENST00000481999 BUD31P41223 144 aaPredicted RBP13.52□□□□□ -0.25
CHD3-211ENST00000481999 MAT1AQ00266 395 aaKnown RBP13.52□□□□□ -0.25
CHD3-211ENST00000481999 CHRNEQ04844 493 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 DGAT2L6Q6ZPD8 337 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 OOSP2Q86WS3 158 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 CADM3Q8N126 398 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 SLC9A6Q92581 669 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 ZNF764Q96H86 408 aaPredicted RBP13.52□□□□□ -0.25
CHD3-211ENST00000481999 CCDC3Q9BQI4 270 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 C6orf62Q9GZU0 229 aaPredicted RBP13.52□□□□□ -0.25
CHD3-211ENST00000481999 NXF2Q9GZY0 626 aaKnown RBP13.52□□□□□ -0.25
CHD3-211ENST00000481999 NMNAT1Q9HAN9 279 aaPredicted RBP13.52□□□□□ -0.25
CHD3-211ENST00000481999 FTSJ1Q9UET6 329 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 KCND3Q9UK17 655 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 MKLN1Q9UL63 735 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 GPR55Q9Y2T6 319 aaPredicted RBP13.52□□□□□ -0.25
CHD3-211ENST00000481999 KLK4Q9Y5K2 254 aa13.52□□□□□ -0.25
CHD3-211ENST00000481999 ZAR1LA6NP61 321 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 B3GALT2O43825 422 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 UBXN7O94888 489 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 FHP07954 510 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 NME1P15531 152 aaKnown RBP13.51□□□□□ -0.25
CHD3-211ENST00000481999 DDX5P17844 614 aaKnown RBP13.51□□□□□ -0.25
CHD3-211ENST00000481999 CRISP1P54107 249 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 INAVAQ3KP66 663 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 SLC22A16Q86VW1 577 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 VRK2Q86Y07 508 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 CAMKVQ8NCB2 501 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 OR6T1Q8NGN1 323 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 SEMA3GQ9NS98 782 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 CLN6Q9NWW5 311 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 POMT2Q9UKY4 750 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 NTNG1Q9Y2I2 539 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 IFT52Q9Y366 437 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 PCDHGA3Q9Y5H0 932 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 SLC22A7Q9Y694 548 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 PI4KAP42356 2102 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 A0A0A6YYC8 382 aaPredicted RBP13.51□□□□□ -0.25
CHD3-211ENST00000481999 LOC100506127A0A0U1RQW1 187 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 I3L1I5 382 aaPredicted RBP13.51□□□□□ -0.25
CHD3-211ENST00000481999 GUCY1B2O75343 617 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 SOX14O95416 240 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 CT62P0C5K7 136 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 KCNJ5P48544 419 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 ZP2Q05996 745 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 KCNAB1Q14722 419 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 ZNF181Q2M3W8 571 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 COLEC12Q5KU26 742 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 ZNF770Q6IQ21 691 aaPredicted RBP13.51□□□□□ -0.25
CHD3-211ENST00000481999 PTCHD4Q6ZW05 846 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 RNF44Q7L0R7 432 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 LRRC25Q8N386 305 aaPredicted RBP13.51□□□□□ -0.25
CHD3-211ENST00000481999 SERINC2Q96SA4 455 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 SP140LQ9H930 580 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 CPNE5Q9HCH3 593 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 ADAP2Q9NPF8 381 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 UGT2A1Q9Y4X1 527 aa13.51□□□□□ -0.25
CHD3-211ENST00000481999 ADAP00813 363 aa13.5□□□□□ -0.25
CHD3-211ENST00000481999 CHMP24386 653 aa13.5□□□□□ -0.25
CHD3-211ENST00000481999 S100A5P33763 92 aa13.5□□□□□ -0.25
CHD3-211ENST00000481999 GRK5P34947 590 aa13.5□□□□□ -0.25
CHD3-211ENST00000481999 TSFMP43897 325 aaKnown RBP13.5□□□□□ -0.25
CHD3-211ENST00000481999 GSTM5P46439 218 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms