RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ERVK-16P61578 105 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 ASB17Q8WXJ9 295 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 CDK15Q96Q40 435 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 ALG8Q9BVK2 526 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 ENPP4Q9Y6X5 453 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 NPIPA2E9PIF3 369 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 NPIPA3F8WFD2 350 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 SPDEFO95238 335 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 SELPP16109 830 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 PBX2P40425 430 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 VGLL4Q14135 290 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 MSMO1Q15800 293 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 CLEC20AQ6ZU45 233 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM200AQ86VY9 491 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 CLDN22Q8N7P3 220 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 SEMA6DQ8NFY4 1073 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 BRIX1Q8TDN6 353 aaKnown RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 GPR148Q8TDV2 347 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 SLC6A14Q9UN76 642 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 LRP5LA4QPB2 252 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 A6NIZ1 184 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 YJEFN3A6XGL0 299 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 HTR3AP46098 478 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 RAP1BP61224 184 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 RAP1AP62834 184 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 GLO1Q04760 184 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 GRIN2CQ14957 1233 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 FAM110CQ1W6H9 321 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 MLIPQ5VWP3 458 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 ERN2Q76MJ5 926 aaKnown RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 DCAF4L2Q8NA75 395 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 PHOSPHO1Q8TCT1 267 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 DAZLQ92904 295 aaKnown RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 SERTAD3Q9UJW9 196 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 FBXL4Q9UKA2 621 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 KCNS2Q9ULS6 477 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 M0R2N6 131 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 EDNRBP24530 442 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 AKR1C2P52895 323 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 OR52E8Q6IFG1 317 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF585AQ6P3V2 769 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 LYSMD3Q7Z3D4 306 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 IGFN1Q86VF2 1251 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 SIAH1Q8IUQ4 282 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 SPTBN1Q01082 2364 aaKnown RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 JUPP14923 745 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 RANP62826 216 aaKnown RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 FLI1Q01543 452 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF546Q86UE3 836 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 RNF141Q8WVD5 230 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 TRMT61BQ9BVS5 477 aaKnown RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 FZD8Q9H461 694 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 ZBTB20Q9HC78 741 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 CH25HO95992 272 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 SLC6A8P48029 635 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 FAM162BQ5T6X4 162 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 NLRP8Q86W28 1048 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 OR5D14Q8NGL3 314 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 OR5AK3PQ8NH89 298 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 SUSD3Q96L08 255 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 LOC730098B7Z3J9 87 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 DCNP07585 359 aaKnown RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 CRABP1P29762 137 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 PSD2Q9BQI7 771 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 PIGVQ9NUD9 493 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 RBFOX1Q9NWB1 397 aaKnown RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 CPA4Q9UI42 421 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 TDRD15B5MCY1 1934 aaKnown RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 TSPAN11A1L157 253 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 CXCL14O95715 111 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 KLK3P07288 261 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 AKR1C4P17516 323 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 BAK1Q16611 211 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 SSX9Q7RTT3 188 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 OR4M1Q8NGD0 313 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 OR6N2Q8NGY6 317 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 FAM83CQ9BQN1 747 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 SLC25A21Q9BQT8 299 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 ERVK-18Q9QC07 812 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 CCDC163A0A0D9SF12 145 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 SDHDO14521 159 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 NUMBP49757 651 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 FAM182BQ5T319 152 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 PSRC1Q6PGN9 363 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 P2RY13Q9BPV8 354 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 WASH6PQ9NQA3 447 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 DCAF13Q9NV06 445 aaKnown RBP12.67□□□□□ -0.38
COL6A3-209ENST00000472056 KLK4Q9Y5K2 254 aa12.67□□□□□ -0.38
COL6A3-209ENST00000472056 MYO16Q9Y6X6 1858 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 SLC38A8A6NNN8 435 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 SCAMP2O15127 329 aaKnown RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 AK4P27144 223 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF691Q5VV52 312 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 TBC1D20Q96BZ9 403 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 ZDHHC12Q96GR4 267 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 GPR89AB7ZAQ6 455 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 GPRIN2O60269 458 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 SRPX2O60687 465 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-209ENST00000472056 GPR89BP0CG08 455 aa12.66□□□□□ -0.38
COL6A3-209ENST00000472056 B3GLCTQ6Y288 498 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms